BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932042
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21190.1 | Symbols: | ER lumen protein retaining receptor f... 1426 0.0
AT4G38790.1 | Symbols: | ER lumen protein retaining receptor f... 869 0.0
AT1G75760.1 | Symbols: | ER lumen protein retaining receptor f... 401 4e-111
> AT2G21190.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr2:9080865-9082904 FORWARD LENGTH=1123
Length=1123
Score = 1426 bits (772), Expect = 0.0
Identities = 827/854 (97%), Gaps = 2/854 (0%)
Strand=Plus/Plus
Query 1 AGAAGAAGAAGAAGGAATCG-AAAATGAAGACTCCGATCCACGCGGTTTCGACATGGGTG 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 28 AGAAGAAGAAGAAGGAATCGAAAAATGAAGACTCCGATCCACGCGGTTTCGACATGGGTG 87
Query 60 AGAAGGCAGCCACCAAAGGTGAAAGCTTTCCTTGCCGTCGTATCTGGTATGGCGGCGCTT 119
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 88 AGGAGGCAGCCTCCAAAGGTGAAAGCTTTCCTTGCCGTCGTATCTGGCATGGCGGCTCTT 147
Query 120 GTTCTTCTCAGATTCATCGTTCACGATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTT 179
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GTTCTCCTCAAACTCATCGTTCACGATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTT 207
Query 180 CATTCTATTGGAATCTCTGTTCTTATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CATTCTATTGGAATCTCTGTTCTTATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGA 267
Query 240 TTGTCATTGAAATCTCAGGAGCTTACGGCAATATTTCTAGCTGTGAGGCTTTATTGCAGT 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 268 TTGTCATTGAAATCTCAGGAGCTTACGGCGATATTTCTAGCTGTGAGGCTTTATTGCAGT 327
Query 300 TTTGTAATGGAATATGACATACATACCATTCTGGACTTGGCTACTTTGGGAACAACACTC 359
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 328 TTTGTAATGGAATATGATATACATACCATTCTGGACTTGGCTACTTTGGGAACAACTCTC 387
Query 360 TGGGTTATATATATGATCCGTTTTAAGCTCAAAGCTACTTACATGGAGGAAAAAGACAAC 419
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 388 TGGGTTATATATATGATCCGTTTTAACCTCAAAACTACTTACATGGAGGAAAAAGACAAC 447
Query 420 TTTGCTCTCTATTATGTGCTCGTGCCCTGTGTCGTGCTAGCTGTATTGATTCATCCATCA 479
|| ||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||
Sbjct 448 TTCGCTCTCTATTATGTGCTGGCGCCCTGTGTTGTGCTAGCTGTATGGATTCATCCATCA 507
Query 480 ACGTCACACAATATATTGAATAGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ACGTCACACAATATATTGAATAGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTT 567
Query 540 TCAGTACTGCCACAGCTGAGAGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCT 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TCAGTACTGCCACAGTTGAGAGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCT 627
Query 600 CATTATGTTTTTGCACTTGGAGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CATTATGTTTTTGCACTTGGAGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAG 687
Query 660 ATTATGGACACCCGCGGACGCCTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATG 719
|| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 688 ATGATGGACACGCACGGACGACTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATG 747
Query 720 GTTATAATCTCAGAAATCGTCCAAACATTCATCTTGGCAGATTTCTGTTACTACTACGTT 779
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 748 GTTATAATCTCAGAAATAGTCCAAACATTCATATTGGCAGATTTCTGTTACTACTACGTT 807
Query 780 AAAAGTGTTTTCGGTGGCCAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AAAAGTGTTTTCGGTGGCCAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTTATA 867
Query 840 AAGaaaaaaaaGAT 853
||| |||||| |||
Sbjct 868 AAGGAAAAAA-GAT 880
> AT4G38790.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr4:18111361-18113206 FORWARD LENGTH=1116
Length=1116
Score = 869 bits (470), Expect = 0.0
Identities = 709/825 (86%), Gaps = 14/825 (2%)
Strand=Plus/Plus
Query 26 GAAGACTCCGATCCACGCGGTTTCGACATGGGTGAGAAGGCAGCCACCAAAGGTGAAAGC 85
||||||||||||||||| ||| | | ||||||| || || || || || |||||||| ||
Sbjct 80 GAAGACTCCGATCCACGTGGTGTGGTCATGGGTTAGGAGACAACCTCCGAAGGTGAAGGC 139
Query 86 TTTCCTTGCCGTCGT-ATCTGGTATGGCGGCGCTT-GTTCTTCTCAGATTCATCGTTCAC 143
||| || ||||| || | |||| |||||||| || ||||||||||||||||| ||||||
Sbjct 140 TTTTCTCGCCGTGGTCA-CTGGCATGGCGGC-TTTGGTTCTTCTCAGATTCATTGTTCAC 197
Query 144 GATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTT 203
|||||||||||||||||||||||||| || ||||||||||| || || |||| ||| ||
Sbjct 198 GATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTGCTC 257
Query 204 ATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTT 263
||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 258 ATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCTCAGGAGCTT 317
Query 264 ACGGCAATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGACATACAT 323
||||| |||||| ||||||| ||||| ||||| || |||||||||||||||| ||||||
Sbjct 318 ACGGCGATATTTTTAGCTGTTAGGCTGTATTGTAGCATTGTAATGGAATATGATATACAT 377
Query 324 ACCATTCTGGACTTGGCTACTTTGGGAACAACACTCTGGGTTATATATATGATCCGTTTT 383
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct 378 ACCATTCTTGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTC 437
Query 384 AAGCTCAA-AGCTACTTACATGGAGGAAAAAGACAACTTTGCTCTCTATTATGTGCTCGT 442
||| | || ||||| |||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 438 AAG-TTAAGAGCTAGTTACATGGAGGACAAAGACAACTTTCCTCTCTATTATGTGCTTGC 496
Query 443 GCCCTGTGTCGTGC--TAGCTGTATTGATTCATCCATCAACGTCACACAATATATTGAAT 500
||||||||| ||| ||||||| || || |||||||| || || || || ||| | ||
Sbjct 497 GCCCTGTGT--TGCATTAGCTGTGTTCATCCATCCATCGACCTCTCATAACATAATAAAC 554
Query 501 AGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGCTGA-G 559
||||| || |||| || ||||| ||||| ||||||||||||||||| || ||||| | |
Sbjct 555 AGAATTTCATGGGCTTTATGTGTATACCTTGAAGCTGTTTCAGTACTACCTCAGCT-ACG 613
Query 560 AGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGG 619
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 614 AGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGG 673
Query 620 AGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGATTATGGACACCCGCGGACG 679
||||||||| || | |||||||| ||||||||||||||| || ||||||| || |||||
Sbjct 674 AGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTGTGGACACGCGGGGACG 733
Query 680 CCTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATCGT 739
||||||||| ||||||||||| | |||||||| |||||| | ||||||||||| ||
Sbjct 734 GTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCAATGGTTCTGATCTCAGAAATTGT 793
Query 740 CCAAACATTCATCTTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCCA 799
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 794 TCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCAAAAGCGTTTTCGGAGGCCA 853
Query 800 GCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTT-ATAAAGa 843
||||||||| |||| || ||||| || || |||||| | |||||
Sbjct 854 GCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTTCA-AAAGA 897
> AT1G75760.1 | Symbols: | ER lumen protein retaining receptor
family protein | chr1:28446632-28448646 REVERSE LENGTH=1352
Length=1352
Score = 401 bits (217), Expect = 4e-111
Identities = 620/814 (76%), Gaps = 30/814 (4%)
Strand=Plus/Plus
Query 33 CCGATCCACGCGGTTTCGACATGGGTGAGAAGGCAGCCACCAAAGGTGAAAGCTTTCCTT 92
||||||||||| || |||||||||| | |||| ||||||||||| |||| ||| ||
Sbjct 244 CCGATCCACGCCGTGACGACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGGTTTTCTC 303
Query 93 GCCGTCGTATCTGGTATGGCGGCGCTTGTTCTT-CTCAGATTCATCGTTCACGATCACGA 151
| || || || | ||| | || || ||| || | ||| | || ||||| || |||||
Sbjct 304 GGTGTTGTCTCCGCCATGACTGCCCTCGTT-TTGTTGAGAGTGATTGTTCATGACCACGA 362
Query 152 CAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTTATCTATAA 211
|||||| || || || || |||||||||||||| |||||||||| || |||||||||||
Sbjct 363 CAATCTTTTTGTCGCTGCTGAAGCTGTTCATTCCCTTGGAATCTCCGTCCTTATCTATAA 422
Query 212 ACTCATGAAGGAGAAGACTTGTGCTGGATTGTCAT-TGAAATCTCAGGAGCTTACGGCAA 270
||||| ||||||| ||||||||||||||| || | | || || || ||||| || ||
Sbjct 423 ACTCACCAAGGAGAGGACTTGTGCTGGATTATC-TCTCAAGTCACAAGAGCTAACAGCTC 481
Query 271 TATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGACATACATACCATT- 329
| ||| | || ||||| || ||||| |||||||| ||||| | ||| || || | | ||
Sbjct 482 TGTTTTTGGCGGTGAGACTGTATTGTAGTTTTGTGATGGAGTTTGATATTCACA-CGTTA 540
Query 330 CTGGACTTGGCTACTTTGG-GAACAACACTCTGGGTTATATATATGATCCGTTTTAAGCT 388
|| |||| |||||| |||| | || ||||| | ||||| ||||||||||||||||||||
Sbjct 541 CTTGACTCGGCTACATTGGTG-ACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCT 599
Query 389 CAAAGCTACTTACATGGAGGAAAAAGACAACTTTGCTCTCTATTATGT-GCTCGTGCCCT 447
|||||||| ||| ||||| || |||||||| |||||| |||| || || | | | || |
Sbjct 600 CAAAGCTAGTTATATGGACGACAAAGACAATTTTGCTATCTACTACGTCGTTATT-CCAT 658
Query 448 GTGTCGTGCTAGCTGTATTGATTCATCCATCAACGTCA-CA-CAATATATTGAATA-GAA 504
|||| || ||| | ||| | ||||| |||||||| || || || |||| | |||| ||
Sbjct 659 GTGTTGTTCTATCAGTACTCATTCACCCATCAACA-CATCATCA-TATAATCAATAAGAT 716
Query 505 TATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGCTGAGAGTGA 564
| || |||| |||||||||||||| |||||||||||||| || || || || ||||| |
Sbjct 717 T-TCTTGGGCCTTCTGTGTTTACCTTGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCA 775
Query 565 TGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGGAG-TA 623
|||| ||||| ||||| || || || || || || ||||| || || || |||| | |
Sbjct 776 TGCAAAACACTAAGATCGTGGAGCCATTTACAGCACATTACGTATTCGCT-TTGGGGATC 834
Query 624 GCAAGATTTTTTAGCTGTGCACACTGGGTT-TTACAGATTATGGACACCCGCGGACGCCT 682
|| || || || || |||||||||||||| || ||| || ||||||| || || || |
Sbjct 835 GCTAGGTTCTTGAGTTGTGCACACTGGGTCCTT-CAGGTTTTGGACACTCGAGGGCGGTT 893
Query 683 GCTTGTAGTGCTG--GGTTATGGACTATGGCC-ATCGATGGTTATAATCTCAGAAATCGT 739
||| | |||| || ||||| | ||||| || |||||| | |||| ||||||||
Sbjct 894 A-TTG-ACTGCTTTAGGATATGGTTTCTGGCCTATA-ATGGTTCTTCTCTCTGAAATCGT 950
Query 740 CCAAACATTCAT-CTTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTT-TCGGTGGC 797
|||||| ||||| || | | || ||||| |||||||| || || ||| || | |||||
Sbjct 951 CCAAACCTTCATTCTAGCC-GACTTCTGCTACTACTATGTCAAGAGT-TTAATGGGTGGT 1008
Query 798 CAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGT 831
||||||||||| | || || || || |||||||
Sbjct 1009 CAGCTTGTTCTTCGTCTCCCGTCAGGTGTTGTGT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5