BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932045

Length=338
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21210.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   553    4e-157


> AT2G21210.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:9085210-9085909 REVERSE LENGTH=700
Length=700

 Score =  553 bits (299),  Expect = 4e-157
 Identities = 325/338 (96%), Gaps = 0/338 (0%)
 Strand=Plus/Plus

Query  1    TCTATAAGAAGATCAAAATCCATGGCTATCAGAATGTCTCGTGTGCTGCAATCATCAAAG  60
            ||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  80   TCTATAAAAAGATCAACATCCATGGCTATCAGAATTTCTCGAGTGCTGCAATCATCAAAG  139

Query  61   CAACTTCTAAAATCGTTGTCACACTCATCAAACAATGTCGATATTCCAAAAGGACACCTT  120
            |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct  140  CAACTTCTAAAATCGTTGTCACACTCATCAAACAATGTCGCTATTCCTAAAGGACACCTT  199

Query  121  GCGGTTTACGTGGGAGAGAGGATGCAGAAGAGGAGATTCGTGGTTCCAGTGACGTACTTA  180
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  200  GCGGTTTACGTAGGAGAGATGATGCAGAAGAGGAGATTCGTGGTTCCAGTGACATACTTA  259

Query  181  AGTCACCCTTCTTTTCAAAAGCTTCTAAGAAAAGCAGAGGAAGAATTTGGGTTTGATCAC  240
            |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  260  AGTCACCCTTGTTTTCAAAAGCTTCTAAGAAAAGCAGAAGAAGAGTTTGGGTTTGATCAC  319

Query  241  CCAATGGGTGGCCTCACTATTCCCTGCACTGAACAAATCTTCATCGATCTCGCCTCTCGC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  CCAATGGGTGGCCTCACTATTCCCTGCACTGAACAAATCTTCATCGATCTCGCCTCTCGC  379

Query  301  CTTAGCACTTCATCGTGATTCACACGGACCAGTAGATC  338
            ||||||||||||||||||||||||| ||||||||||||
Sbjct  380  CTTAGCACTTCATCGTGATTCACACTGACCAGTAGATC  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15784073186


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5