BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932046

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21220.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   560    3e-159


> AT2G21220.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:9089326-9089813 FORWARD LENGTH=488
Length=488

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 337/353 (95%), Gaps = 3/353 (1%)
 Strand=Plus/Plus

Query  1    CAAGAAACAATAAACTAACAATGGCGGTTAAGAGATCTCCTAAGCTAACACAAACCGCAA  60
            ||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct  36   CAAGAAACAAT-AACTAGCAATGGCGGTTAAGAGATCTTCAAAGCTAACACAAACCGCAA  94

Query  61   TGCTGAAGCAAATCCTCAAGAGATGCTCTAGCTTGGCTAAGAATCAATGCTATGATGAGG  120
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  95   TGCTGAAGCAAATCCTCAAGAGATGCTCGAGCTTGGCCAAGAATCAATGCTATGATGAGG  154

Query  121  A-GAGCCTGCCTGTAGACGTACCAAAGGGTCATTTCGCGGTCTATGTAGGCGAAAAGAGG  179
            | | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  155  ATG-GTCTGCCTGTAGACGTACCAAAGGGTCATTTCCCGGTCTATGTAGGCGAAAAGAGG  213

Query  180  AGCCGGTACATCGTACCCATATCCTTCTTGACTCATCCTAAGTTCAAGAGCTTGCTTCAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  AGCCGGTACATCGTACCCATATCCTTCTTGACTCATCCTAAGTTCAAGAGCTTGCTTCAA  273

Query  240  CAGGCAGAGGAAGAGTTCGGGTTCAATCATGACATGGGACTCACTATTCCTTGTGAAGAA  299
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  CAGGCAGAAGAAGAGTTCGGGTTCAATCATGACATGGGACTCACTATTCCTTGTGAAGAA  333

Query  300  GTTGTTTTCCGCTCTCTAACATCCATGATCCGATGAGTGAGTGGAAGACAAAG  352
            ||||||||||||||| |||||||||||||| |||||| |||||| ||| ||||
Sbjct  334  GTTGTTTTCCGCTCTTTAACATCCATGATCGGATGAGGGAGTGGGAGAGAAAG  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16688892668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5