BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932049

Length=1951
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21235.1 | Symbols:  | Basic-leucine zipper (bZIP) transcrip...   154    3e-36


> AT2G21235.1 | Symbols:  | Basic-leucine zipper (bZIP) transcription 
factor family protein | chr2:9096592-9098767 REVERSE 
LENGTH=1653
Length=1653

 Score =  154 bits (83),  Expect = 3e-36
 Identities = 168/205 (82%), Gaps = 22/205 (11%)
 Strand=Plus/Plus

Query  54   ACTCAATACCAGCAGAATCCTTTTAGCAC-CA--ACGGTGGCCAGAGCACAGGCATGTCA  110
            ||||||||||||||||||||||| || ||  |  | |||||||||||||| ||| |||||
Sbjct  22   ACTCAATACCAGCAGAATCCTTTCAGTACTGATGATGGTGGCCAGAGCACCGGCGTGTCA  81

Query  111  CTGTCTCACCAGACTTCTCCGTCAACACTTTCTCAGGTC-CCACCACTGATCCGTTTTCC  169
            |  |||       |||| |||     || |||||  ||| |||||||||||||||| |||
Sbjct  82   C--TCT-------CTTC-CCG----GAC-TTCTC-TGTCACCACCACTGATCCGTTATCC  125

Query  170  AGCCGGGTCACCAGACTTCAGCCCCGGACCACGGTGTACGACTCAGCCGTTCCCTACCTA  229
            ||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||| 
Sbjct  126  AGCCGGGTCGCCGGACTTCAGCCCCGGACCACGGTGTACGACTCAACCGTCCCCTACCTT  185

Query  230  CTCTGACTTCACTCA-GACGAGTCC  253
            ||| ||||||||||| | |||||||
Sbjct  186  CTCCGACTTCACTCAAG-CGAGTCC  209


 Score =  135 bits (73),  Expect = 1e-30
 Identities = 189/243 (78%), Gaps = 16/243 (7%)
 Strand=Plus/Plus

Query  366  CCGACAAGCTTTACTCCGTTC-CCTACCTCCTCTGAC-TTCACTCAAACGAGTCCTTCAT  423
            ||| |||||||||| || |||   || || |||  || ||||| |||| || |||| |  
Sbjct  232  CCGGCAAGCTTTACACC-TTCGTTTAGCTTCTCCAACATTCAC-CAAATGATTCCTACGC  289

Query  424  CGTCAACGTTCCATAACTCACAGGGGCCGACGATCTCCACTCCGTCGTCTAGCTTCTACT  483
            ||||  ||| |||||||||| ||| | ||  || |||  || ||||||||||||||||||
Sbjct  290  CGTCGTCGTCCCATAACTCAAAGGCGTCGGTGAGCTCTGCTTCGTCGTCTAGCTTCTACT  349

Query  484  TTCCCCAGACGAGTCCTTCACCGTCGC-CGGTGAGCTCTTCTACGCCGTTCAGTC-ATGA  541
            |||||||||||||||||||| | | || |  | | |||   | || ||||||||| | ||
Sbjct  350  TTCCCCAGACGAGTCCTTCATCAT-GCTC--T-A-CTCCG-T-CGTCGTTCAGTCCA-GA  401

Query  542  CTCATTTA-TGCACTCCAACCCCGGACCATGGTCGATACCTCAACCATCGCATGTGTTCT  600
            ||| |||  | ||||||||| |||||||||||||||| ||||| || || | ||||||||
Sbjct  402  CTCGTTTTCT-CACTCCAACACCGGACCATGGTCGATCCCTCAGCCTTCCCCTGTGTTCT  460

Query  601  CAT  603
            |||
Sbjct  461  CAT  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 96636049125


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5