BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932059
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21320.1 | Symbols: | B-box zinc finger family protein | ch... 846 0.0
AT4G38960.3 | Symbols: | B-box type zinc finger family protein... 294 5e-79
> AT2G21320.1 | Symbols: | B-box zinc finger family protein |
chr2:9126263-9127843 FORWARD LENGTH=949
Length=949
Score = 846 bits (458), Expect = 0.0
Identities = 497/516 (96%), Gaps = 1/516 (0%)
Strand=Plus/Plus
Query 2 TAATCGTTTGAGT-AAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TAATCGTTTGAGTAAAAAACATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTA 279
Query 61 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCACA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 280 TCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA 339
Query 121 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 340 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCAC 399
Query 181 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGATGGTAGTT 459
Query 241 CCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACACAAGCGGT 300
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct 460 CCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGT 519
Query 301 TTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCCGACCAAC 360
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 520 TTCTATTACTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAAC 579
Query 361 TGGGATTACGGTGTCAAAAGGTTTCCTCTGGTCGCGGTCAAGAATCAAATGGAAATGGTG 420
||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 580 TGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG 639
Query 421 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAGAGAGTTCACGAGCCTGGAT 480
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 640 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGAT 699
Query 481 CAAATCACCAAGAGGAGGGTATTGATGTAAATAACG 516
|| || ||||||||||||||||||||||||||||||
Sbjct 700 CACATAACCAAGAGGAGGGTATTGATGTAAATAACG 735
> AT4G38960.3 | Symbols: | B-box type zinc finger family protein
| chr4:18161088-18163321 FORWARD LENGTH=1445
Length=1445
Score = 294 bits (159), Expect = 5e-79
Identities = 210/235 (89%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 113 AGTTCACAAGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAG 172
|||||| | |||||||||||| |||||||||||| | ||||| || |||||||| || ||
Sbjct 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769
Query 173 TAATGCGCCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGA 232
||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829
Query 233 TGGTAGTTCCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACA 292
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889
Query 293 CAAG-CGGTTTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAA 346
| | |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 890 CG-GTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26423161322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5