BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932077

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9...  82.4    5e-15


> AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9179410-9182356 
REVERSE LENGTH=2663
Length=2663

 Score = 82.4 bits (44),  Expect = 5e-15
 Identities = 97/120 (81%), Gaps = 14/120 (12%)
 Strand=Plus/Plus

Query  313  CCAAGTCTACTAATATTATTATCATCGATTCAGATGATGAGATGCCTCAAGACTCAG-T-  370
            |||||||| || ||| | ||||||||||||||||||| ||| |||||||||| |||| | 
Sbjct  227  CCAAGTCTTCTCATAATCTTATCATCGATTCAGATGACGAGTTGCCTCAAGAATCAGTTA  286

Query  371  -T---A-T--TCCTCTAGATGATAGAA-GATCGAAGAAGCTCAAGGAAGTGATTGTTGTG  422
             |   | |  |||||||||  | | || | | ||||||||||||||||||||||||||||
Sbjct  287  CTCAAATTAATCCTCTAGA--A-AAAAGGCT-GAAGAAGCTCAAGGAAGTGATTGTTGTG  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31195405287


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5