BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932114
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21655.1 | Symbols: | Protein of unknown function (DUF784) ... 593 4e-169
AT3G30247.1 | Symbols: | Protein of unknown function (DUF784) ... 580 3e-165
AT3G29797.1 | Symbols: | Protein of unknown function (DUF784) ... 549 9e-156
AT2G21727.1 | Symbols: | Protein of unknown function (DUF784) ... 497 3e-140
> AT2G21655.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:9263537-9264098 FORWARD LENGTH=562
Length=562
Score = 593 bits (321), Expect = 4e-169
Identities = 447/508 (88%), Gaps = 7/508 (1%)
Strand=Plus/Plus
Query 1 AAACATCAAAATACTTTAAAATGGAGACTAAAACCAT-TTTCATGATATATTCTTTAATC 59
||| ||||||||| ||||||||||||| |||||| || ||| ||||||| |||||| |||
Sbjct 28 AAATATCAAAATATTTTAAAATGGAGAATAAAACAATGTTT-ATGATATTTTCTTTGATC 86
Query 60 ATGGTTTTGCTATCGTTTTCTCATCCAACTTT-GGCCATAGAAGGCGATAATGACGAGCC 118
|||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||||
Sbjct 87 ATGGTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCC 145
Query 119 ACTACTCATTTCAGACGACGAGTTTGATGGGATGATTGCAATG-TCACCAACATCGGACG 177
||| ||||||||||||||||||||||||| ||||| |||| | || || |||||||||
Sbjct 146 ACTCCTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACA 204
Query 178 ATTATAACGAAAATGTTGGTCGTAAATATTCaaaaaaaCAAATAGATTATCTTAAGAATT 237
|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |
Sbjct 205 ATTATAACGAAAATGTTGGTAGTAAATATTCAAAGAAACAAATAAATTATCTTATGAACT 264
Query 238 GCAGTAAAAAGATGGACGTCCCATATCAATGTACCGTAGAAGTGTTAGCTGATATTATTC 297
||||||||||||||| ||||||| || |||||| | ||||||| | ||||| |||||||
Sbjct 265 GCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATTC 324
Query 298 AGAACAAAAGTGTTTCAAGGGATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTC 357
|||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 325 AGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGTC 384
Query 358 ACACGGAATGGATGCGATTATTTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGC 417
||| ||||| ||| ||||||||||||||| ||| |||||| ||||||| ||||||
Sbjct 385 ACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAAA 444
Query 418 GGTTTTCCAAAACTAATGAAATATGGAATAGATGTTCTACTGAAATTGGAGCTGTTTCAC 477
||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||
Sbjct 445 GGTTTTCCAAAACTAATGAGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTCAC 504
Query 478 CATTTTCTCGTTAAAAAA-TGTAACTAA 504
||| |||| ||||||||| |||||||||
Sbjct 505 CATATTCTGGTTAAAAAAATGTAACTAA 532
> AT3G30247.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:11888176-11888712 REVERSE LENGTH=537
Length=537
Score = 580 bits (314), Expect = 3e-165
Identities = 445/508 (88%), Gaps = 10/508 (2%)
Strand=Plus/Plus
Query 6 TCAAAATACTTTAAAATGGAGACTAAAACCATTTTCATGATATATTCTTTAATCATGGTT 65
|||||||| ||||| ||||||| ||||||||| |||||||||| ||||| |||||| ||
Sbjct 1 TCAAAATATTTTAAGATGGAGAATAAAACCATGTTCATGATATTTTCTTCGATCATGATT 60
Query 66 TTGCTATCGTTTTCTCATCCAACTTTGGCCATAGAAGGCGATAATGACGAGCCACTACTC 125
||||||||||||||||||||||||||||||| |||||||||||||||| ||| | | |||
Sbjct 61 TTGCTATCGTTTTCTCATCCAACTTTGGCCAAAGAAGGCGATAATGACAAGCAAGTCCTC 120
Query 126 ATTTCAGACGACGAGTTTGATGGGATGATTGCAATGTCACCAACATCGGACGATTATAAC 185
|||| ||||||||||||||||| ||||||||||| |||||| ||| |||| |||||||||
Sbjct 121 ATTTTAGACGACGAGTTTGATGCGATGATTGCAAGGTCACCGACAGCGGAAGATTATAAC 180
Query 186 GAAAATGTTGGTCGTAAATATTCaaaaaaaCAAATAGATTATCTTAA-GAATTGCAGTAA 244
|||||||||||||||||||||||||| ||||||| ||| ||||| | |||||| ||||
Sbjct 181 GAAAATGTTGGTCGTAAATATTCAAAGAAACAAAAAGAATATCT-ACTGAATTGTAGTAT 239
Query 245 AAAGATGGACGTCCCATATC-A-A----TGTACCGTAGAAGTGTTAGCTGATATTATTCA 298
|||||||||| ||||| | | | | |||| | ||||||||| ||||| ||||||||
Sbjct 240 AAAGATGGACATCCCAGACCCAGACAAATGTATAGAAGAAGTGTTGGCTGAAATTATTCA 299
Query 299 GAACAAAAGTGTTTCAAGGGATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTCA 358
||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 300 GAACAAAAGTGCTTCAAGGGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGTCA 359
Query 359 CACGGAATGGATGCGATTATTTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGCG 418
|| ||||| ||| |||| |||||||||| ||||||||||||||||||| |||||| |
Sbjct 360 CATGGAATATATGAAATTAATTTTTCAAATCTATCAACTCAAACGTTTTACTTCTAAAAG 419
Query 419 GTTTTCCAAAACTAATGAAATATGGAATAGATGTTCTACTGAAATTGGAGCTGTTTCACC 478
||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 420 GTTTTCCAAAACTAATGAAATATGGAAGAGATGTTCCACTGGAATTGGAGCTGTTTCACC 479
Query 479 ATTTTCTCGTTAAAAAA--TGTAACTAA 504
|| |||| ||||||||| | |||||||
Sbjct 480 ATATTCTGGTTAAAAAAACTATAACTAA 507
> AT3G29797.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:11717613-11718083 FORWARD LENGTH=471
Length=471
Score = 549 bits (297), Expect = 9e-156
Identities = 416/474 (88%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 21 ATGGAGACTAAAACCATTTTCATGATATATTCTTTAATCATGGTTTTGCTATCGTTTTCT 80
||||||| ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAATAAAACCATGTTCATCCTATTTTCTTCGATCATGGTTTTGCTATCGTTTTCT 60
Query 81 CATCCAACTTTGGCCATAGAAGGCGATAATGACGAGCCACTACTCATTTCAGACGACGAG 140
|||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 61 CATCTAACTTTGGCCAAAGAAGGCGATAATGACAAGCCACTCCTCATTTCAGACGACGAG 120
Query 141 TTTGATGGGATGATTGCAATGTCACCAACATCGGACGATTATAACGAAAATGTTGGTCGT 200
||| ||| ||||||||||| |||||| ||| || ||||||||||||| ||||||||||||
Sbjct 121 TTTAATGCGATGATTGCAAGGTCACCGACAGCGAACGATTATAACGATAATGTTGGTCGT 180
Query 201 AAATATTCaaaaaaaCAAATAGATTATCTTA-AGAATTGCAGTAAAAAGATGGACGTCCC 259
| ||||||||| ||||||| | | |||||| | || |||||||||||||||||||||||
Sbjct 181 ACATATTCAAAGAAACAAAAAAAATATCTTCTA-AACTGCAGTAAAAAGATGGACGTCCC 239
Query 260 ATATCAA-TGTACCGTAGAAGTGTTAGCTGATATTATTCAGAACAAAAGTGTTTCAAGGG 318
| | ||| |||| | ||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 240 AGA-CAAATGTATAGAAGAAGTGTTGGCTGAAATTATTCAGAACAAAAGTGCTTCAAGGG 298
Query 319 ATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTCACACGGAATGGATGCGATTAT 378
|||||||| |||||||||| |||||||||||||||||||| ||||| ||| |||||
Sbjct 299 ATTGTTGTTTAGGGATAGTGAAAGCTGGAAAGGAATGTCACATGGAATATATGAAATTAT 358
Query 379 TTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGCGGTTTTCCAAAACTAATGAAA 438
|||||||||| |||||||| | |||||||| |||||| ||||||||||| |||||||||
Sbjct 359 TTTTTCAAATCTATCAACTTAGACGTTTTACTTCTAAAAGGTTTTCCAAAGCTAATGAAA 418
Query 439 TATGGAATAGATGTT-CTACTGAAATTGGAGCTGTTTCACCATTTTCTCGTTAA 491
||||||| ||||||| | ||||||||||||||||||||||| | |||| |||||
Sbjct 419 TATGGAACAGATGTTTC-ACTGAAATTGGAGCTGTTTCACCGTATTCTGGTTAA 471
> AT2G21727.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:9278597-9279052 REVERSE LENGTH=456
Length=456
Score = 497 bits (269), Expect = 3e-140
Identities = 398/458 (87%), Gaps = 18/458 (4%)
Strand=Plus/Plus
Query 21 ATGGAGACTAAAACCATTTTCATGATATATTCTTTAATCATGGTTTTGCTATCGTTTTCT 80
||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAATAAAACCATGTTCATGATATTTTCTTCGATCATGGTTTTGCTATCGTTTTCT 60
Query 81 CATCCAACTTTGGCCATAGAAGGCGATAATGACGAGCCACTACTCATTTCAGACGACGAG 140
|||| ||||||||||| |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 61 CATCTAACTTTGGCCAAAGAAAGAGGTAATGACGAGCCACTACTCATTTCAGACGACGAG 120
Query 141 TTTGATGGGATGATTGCAATGTCACCAACATCGGACGATTATAACGA-AA-ATGTTGGTC 198
||||||| ||||| |||| |||||| |||| |||||||||||||| || ||||| |
Sbjct 121 TTTGATGCAATGATGGCAAGGTCACCGGCATCAGACGATTATAACGACAATATGTTA--C 178
Query 199 GTAAATATTCaaaaaaaCAAATAGATTATCTTAAGAATTGCAGTAAAAAGATGGAC--G- 255
||||||||||| ||||| ||| ||||||||||||||| ||| |||||||||||||| |
Sbjct 179 GTAAATATTCAGAAAAAGAAAAAGATTATCTTAAGAACTGCGGTAAAAAGATGGACATGC 238
Query 256 --T----CCCATATCAATGTACCGTA-GAAGTGTTAGCTGATATTATTCAGAACAAAAGT 308
| ||||||||||||| | | | |||||| ||||| ||||| ||||||||||||||
Sbjct 239 CATATGGCCCATATCAATGTGCGG-ACGAAGTGATAGCTTATATTGTTCAGAACAAAAGT 297
Query 309 GTTTCAAGGGATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTCACACGGAATGG 368
|||||||||| ||||||| |||||||||||| ||||||||||||||| || | | |||||
Sbjct 298 GTTTCAAGGGTTTGTTGTTGGGGGATAGTGAAAGCTGGAAAGGAATGCCATAAGAAATGG 357
Query 369 ATGCGATTATTTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGCGGTTTTCCAAA 428
| | ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 358 ACGGGATTATTTTTTGAAATGTATCAACTCAAACGTTTTAGTTCTAAGAAGTTTTCCAAA 417
Query 429 ACTAATGAAATATGGAATA-GATGTTCTACTGA-AATT 464
||||||||||||||||| | | ||||||||||| ||||
Sbjct 418 ACTAATGAAATATGGAACATG-TGTTCTACTGATAATT 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24413795442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5