BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932115
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21655.1 | Symbols: | Protein of unknown function (DUF784) ... 590 5e-168
AT3G30247.1 | Symbols: | Protein of unknown function (DUF784) ... 566 9e-161
AT3G29797.1 | Symbols: | Protein of unknown function (DUF784) ... 555 2e-157
AT2G21727.1 | Symbols: | Protein of unknown function (DUF784) ... 448 3e-125
> AT2G21655.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:9263537-9264098 FORWARD LENGTH=562
Length=562
Score = 590 bits (319), Expect = 5e-168
Identities = 454/517 (88%), Gaps = 17/517 (3%)
Strand=Plus/Plus
Query 4 TATCAAAATATTTTAAAATGGAGAATAAAACTAT-TTTCATGATATTTTCTTTAATCATG 62
||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||
Sbjct 31 TATCAAAATATTTTAAAATGGAGAATAAAACAATGTTT-ATGATATTTTCTTTGATCATG 89
Query 63 GTTTTGCTATCGTTTTCTCATCCAACTTT-GGCTATAGAAGGCGATAATGACGAGTCAC- 120
||||||||||||||||||||||||||||| ||| | |||| ||||||||||| || |||
Sbjct 90 GTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCCACT 148
Query 121 CACTCATTTCAGACGACGAGTTTGATGCGATGATTGCAATG-TCACCGACATCGGACGAT 179
| |||||||||||||||||||||||||| ||||| |||| | || || ||||||||| ||
Sbjct 149 C-CTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACAAT 206
Query 180 TATAACGTCAATAT-G-TATCGTAAGTATTCaaaaaaacaaa-aaGATTATCTTAAGAAC 236
||||||| ||| | | || |||| |||||||| ||||||| || ||||||||| ||||
Sbjct 207 TATAACGAAAATGTTGGTA--GTAAATATTCAAAGAAACAAATAA-ATTATCTTATGAAC 263
Query 237 TGCAGTAAAAAGATGGACGTCCCATACCAATGTGCCGAAGAAGTGTTAGCTGAAATTCTT 296
|||||||||||||||| ||||||| | ||||| ||||||||| | ||||||||| ||
Sbjct 264 TGCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATT 323
Query 297 CTGAACAAAAGTGCTTCAAGAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGT 356
| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 324 CAGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGT 383
Query 357 CACATGGAATTTATGAACTTATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAAA 416
|||||||||| |||||| |||||||||||| | ||| |||||| |||||| ||||||||
Sbjct 384 CACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAA 443
Query 417 AGGTTTTCTAAATCTAATGCA-ATATGGAACAGATGTTCTACTGAAATTGGAGCTGTTTC 475
|||||||| ||| |||||| | ||||||||||||||||| || |||||||||| ||||||
Sbjct 444 AGGTTTTCCAAAACTAATG-AGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTC 502
Query 476 ACCCTTTTCTGGTTAAAAAA-TGTAACTAATTTTATT 511
||| | |||||||||||||| ||||||||||||||||
Sbjct 503 ACCATATTCTGGTTAAAAAAATGTAACTAATTTTATT 539
> AT3G30247.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:11888176-11888712 REVERSE LENGTH=537
Length=537
Score = 566 bits (306), Expect = 9e-161
Identities = 449/517 (87%), Gaps = 14/517 (3%)
Strand=Plus/Plus
Query 6 TCAAAATATTTTAAAATGGAGAATAAAACTATTTTCATGATATTTTCTTTAATCATGGTT 65
|||||||||||||| |||||||||||||| || |||||||||||||||| |||||| ||
Sbjct 1 TCAAAATATTTTAAGATGGAGAATAAAACCATGTTCATGATATTTTCTTCGATCATGATT 60
Query 66 TTGCTATCGTTTTCTCATCCAACTTTGGCTATAGAAGGCGATAATGACGAGTCACCAC-T 124
||||||||||||||||||||||||||||| | |||||||||||||||| || || | |
Sbjct 61 TTGCTATCGTTTTCTCATCCAACTTTGGCCAAAGAAGGCGATAATGACAAG-CAAGTCCT 119
Query 125 CATTTCAGACGACGAGTTTGATGCGATGATTGCAATGTCACCGACATCGGACGATTATAA 184
||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct 120 CATTTTAGACGACGAGTTTGATGCGATGATTGCAAGGTCACCGACAGCGGAAGATTATAA 179
Query 185 CGTCAATAT-GTATCGTAAGTATTCaaaaaaacaaaaaGATTATCTTAA-GAACTGCAGT 242
|| ||| | | |||||| |||||||| ||||||||||| ||||| | ||| || |||
Sbjct 180 CGAAAATGTTGG-TCGTAAATATTCAAAGAAACAAAAAGAATATCT-ACTGAATTGTAGT 237
Query 243 AAAAAGATGGACGTCCCATACC-A-A----TGTGCCGAAGAAGTGTTAGCTGAAATTCTT 296
| |||||||||| ||||| ||| | | ||| ||||||||||| ||||||||| ||
Sbjct 238 ATAAAGATGGACATCCCAGACCCAGACAAATGTATAGAAGAAGTGTTGGCTGAAATTATT 297
Query 297 CTGAACAAAAGTGCTTCAAGAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGT 356
| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 298 CAGAACAAAAGTGCTTCAAGGGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGT 357
Query 357 CACATGGAATTTATGAACTTATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAAA 416
|||||||||| |||||| ||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 358 CACATGGAATATATGAAATTAATTTTTCAAATCTATCAACTCAAACGTTTTACTTCTAAA 417
Query 417 AGGTTTTCTAAATCTAATGCAATATGGAACAGATGTTCTACTGAAATTGGAGCTGTTTCA 476
|||||||| ||| |||||| ||||||||| |||||||| |||| ||||||||||||||||
Sbjct 418 AGGTTTTCCAAAACTAATGAAATATGGAAGAGATGTTCCACTGGAATTGGAGCTGTTTCA 477
Query 477 CCCTTTTCTGGTTAAAAAA--TGTAACTAATTTTATT 511
|| | |||||||||||||| | |||||||||| |||
Sbjct 478 CCATATTCTGGTTAAAAAAACTATAACTAATTTCATT 514
> AT3G29797.1 | Symbols: | Protein of unknown function (DUF784)
| chr3:11717613-11718083 FORWARD LENGTH=471
Length=471
Score = 555 bits (300), Expect = 2e-157
Identities = 420/477 (88%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 21 ATGGAGAATAAAACTATTTTCATGATATTTTCTTTAATCATGGTTTTGCTATCGTTTTCT 80
|||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAATAAAACCATGTTCATCCTATTTTCTTCGATCATGGTTTTGCTATCGTTTTCT 60
Query 81 CATCCAACTTTGGCTATAGAAGGCGATAATGACGAGTCAC-CACTCATTTCAGACGACGA 139
|||| ||||||||| | |||||||||||||||| || ||| | |||||||||||||||||
Sbjct 61 CATCTAACTTTGGCCAAAGAAGGCGATAATGACAAGCCACTC-CTCATTTCAGACGACGA 119
Query 140 GTTTGATGCGATGATTGCAATGTCACCGACATCGGACGATTATAACG-TCAATAT-GTAT 197
|||| ||||||||||||||| |||||||||| || |||||||||||| | ||| | | |
Sbjct 120 GTTTAATGCGATGATTGCAAGGTCACCGACAGCGAACGATTATAACGAT-AATGTTGG-T 177
Query 198 CGTA-AGTATTCaaaaaaacaaaaaGATTATCTTA-AGAACTGCAGTAAAAAGATGGACG 255
|||| | |||||||| ||||||||| | |||||| | ||||||||||||||||||||||
Sbjct 178 CGTACA-TATTCAAAGAAACAAAAAAAATATCTTCTA-AACTGCAGTAAAAAGATGGACG 235
Query 256 TCCCATACCAATGTGCCGAAGAAGTGTTAGCTGAAATTCTTCTGAACAAAAGTGCTTCAA 315
||||| || ||||| ||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 236 TCCCAGACAAATGTATAGAAGAAGTGTTGGCTGAAATTATTCAGAACAAAAGTGCTTCAA 295
Query 316 GAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGTCACATGGAATTTATGAACT 375
| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 296 GGGATTGTTGTTTAGGGATAGTGAAAGCTGGAAAGGAATGTCACATGGAATATATGAAAT 355
Query 376 TATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAAAAGGTTTTCTAAATCTAATG 435
||||||||||| |||||||||| | ||||||| |||||||||||||||| ||| ||||||
Sbjct 356 TATTTTTTCAAATCTATCAACTTAGACGTTTTACTTCTAAAAGGTTTTCCAAAGCTAATG 415
Query 436 CAATATGGAACAGATGTT-CTACTGAAATTGGAGCTGTTTCACCCTTTTCTGGTTAA 491
||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||
Sbjct 416 AAATATGGAACAGATGTTTC-ACTGAAATTGGAGCTGTTTCACCGTATTCTGGTTAA 471
> AT2G21727.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:9278597-9279052 REVERSE LENGTH=456
Length=456
Score = 448 bits (242), Expect = 3e-125
Identities = 389/458 (85%), Gaps = 18/458 (4%)
Strand=Plus/Plus
Query 21 ATGGAGAATAAAACTATTTTCATGATATTTTCTTTAATCATGGTTTTGCTATCGTTTTCT 80
|||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAATAAAACCATGTTCATGATATTTTCTTCGATCATGGTTTTGCTATCGTTTTCT 60
Query 81 CATCCAACTTTGGCTATAGAAGGCGATAATGACGAGTCACCACTCATTTCAGACGACGAG 140
|||| ||||||||| | |||| | | |||||||||| ||| |||||||||||||||||||
Sbjct 61 CATCTAACTTTGGCCAAAGAAAGAGGTAATGACGAGCCACTACTCATTTCAGACGACGAG 120
Query 141 TTTGATGCGATGATTGCAATGTCACCGACATCGGACGATTATAACGTCAATATGT-ATCG 199
|||||||| ||||| |||| ||||||| |||| ||||||||||||| |||||||| | ||
Sbjct 121 TTTGATGCAATGATGGCAAGGTCACCGGCATCAGACGATTATAACGACAATATGTTA-CG 179
Query 200 TAAGTATTCaaaaaaacaaaaaGATTATCTTAAGAACTGCAGTAAAAAGATGGAC--G-- 255
||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 180 TAAATATTCAGAAAAAGAAAAAGATTATCTTAAGAACTGCGGTAAAAAGATGGACATGCC 239
Query 256 -T----CCCATACCAATGTGCCGAAGAAGTGTTAGCTGAAATTCTTCTGAACAAAAGTGC 310
| |||||| |||||||| || |||||| ||||| | ||| ||| |||||||||||
Sbjct 240 ATATGGCCCATATCAATGTGCGGACGAAGTGATAGCTTATATTGTTCAGAACAAAAGTGT 299
Query 311 TTCAAGAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGTCACATGGAATTTAT 370
|||||| | ||||||| |||||||||||||||||||||| ||||| || | | ||| |
Sbjct 300 TTCAAGGGTTTGTTGTTGGGGGATAGTGAAAGCTGGAAAGGAATGCCATAAGAAATGGAC 359
Query 371 GA-ACTTATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAA-AAGGTTTTCTAAA 428
| | ||||||||| || | |||||||||||||||||| |||||| ||| ||||| |||
Sbjct 360 GGGA-TTATTTTTTGAAATGTATCAACTCAAACGTTTTAGTTCTAAGAAG-TTTTCCAAA 417
Query 429 TCTAATGCAATATGGAACA-GATGTTCTACTGA-AATT 464
|||||| ||||||||||| | ||||||||||| ||||
Sbjct 418 ACTAATGAAATATGGAACATG-TGTTCTACTGATAATT 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24413795442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5