BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932117
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)... 516 7e-146
AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 235 2e-61
> AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)
| chr2:9281986-9282363 REVERSE LENGTH=378
Length=378
Score = 516 bits (279), Expect = 7e-146
Identities = 346/379 (91%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTCGT-ACACAAGTTTCCTCGTTGCCATCGTCGCTCTTCTCCTCGTGCTCAATAT 79
|||||||| | |||||||||||||| |||||| | ||||| | |||||||| ||||| ||
Sbjct 1 ATGGCTTC-TAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACAT 59
Query 80 CTCCGGCAGAACTCTCCCGGAGACGGCAGATTCCACCAACATAGCGGCACGGCTCAACGG 139
|||||| ||||||||||||||||||| ||||||||| |||||||||||| | ||||||||
Sbjct 60 CTCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGG 119
Query 140 AGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATCATGCACAAACGAAAT 199
||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 120 AGGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAAT 179
Query 200 CGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 259
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 180 CGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 239
Query 260 AGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGGCTTTACCTCTGATGA 319
||||||||||| ||||||||||| |||||| | || ||||| |||||||||||||||||
Sbjct 240 GGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATGA 299
Query 320 AACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCGCCGGCGCC 379
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 AACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGCC 359
Query 380 TTCCTCGGTGAAACTTTGA 398
|||||| ||||||||||||
Sbjct 360 TTCCTCTGTGAAACTTTGA 378
> AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr2:9333002-9333336 REVERSE
LENGTH=335
Length=335
Score = 235 bits (127), Expect = 2e-61
Identities = 229/274 (84%), Gaps = 24/274 (9%)
Strand=Plus/Plus
Query 125 GGCACGGCTCAACGGAGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATC 184
|||| | ||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||
Sbjct 86 GGCAAGACTCAACGGAGGAGGACTAATGGAGTGTTGAAACGCACTTTACGAGCTCAAGTC 145
Query 185 ATGCACAAACGAAATCGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTG 244
|||||| |||||||||||||| |||||||||||||| || | | || | |||||| |
Sbjct 146 ATGCACCAACGAAATCGTTCTCTTCTTCCTCAACGGTGA-AAC-AA--C--CGTCGA--G 197
Query 245 CTGTCAAGCCGTCGAAGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGG 304
||| | || | | || | | ||||||||||| |||||| | || ||||| ||
Sbjct 198 --GTC-A----TC--A--C--CA-C-C-GATTGTTGGCCTGCGATGCTCACGTCTCTAGG 241
Query 305 CTTTACCTCTGATGAAACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGG 364
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 242 ATTTACCTCTGATGAAACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGG 301
Query 365 TTCTTCGCCGGCGCCTTCCTCGGTGAAACTTTGA 398
|||||| |||||||||||||| ||||||||||||
Sbjct 302 TTCTTCTCCGGCGCCTTCCTCTGTGAAACTTTGA 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19805493106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5