BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932117 Length=418 Score E Sequences producing significant alignments: (Bits) Value AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278)... 516 7e-146 AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 235 2e-61 > AT2G21740.1 | Symbols: | Protein of unknown function (DUF1278) | chr2:9281986-9282363 REVERSE LENGTH=378 Length=378 Score = 516 bits (279), Expect = 7e-146 Identities = 346/379 (91%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 21 ATGGCTTCGT-ACACAAGTTTCCTCGTTGCCATCGTCGCTCTTCTCCTCGTGCTCAATAT 79 |||||||| | |||||||||||||| |||||| | ||||| | |||||||| ||||| || Sbjct 1 ATGGCTTC-TAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACAT 59 Query 80 CTCCGGCAGAACTCTCCCGGAGACGGCAGATTCCACCAACATAGCGGCACGGCTCAACGG 139 |||||| ||||||||||||||||||| ||||||||| |||||||||||| | |||||||| Sbjct 60 CTCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGG 119 Query 140 AGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATCATGCACAAACGAAAT 199 ||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 120 AGGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAAT 179 Query 200 CGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 259 |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 180 CGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 239 Query 260 AGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGGCTTTACCTCTGATGA 319 ||||||||||| ||||||||||| |||||| | || ||||| ||||||||||||||||| Sbjct 240 GGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATGA 299 Query 320 AACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCGCCGGCGCC 379 ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| Sbjct 300 AACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGCC 359 Query 380 TTCCTCGGTGAAACTTTGA 398 |||||| |||||||||||| Sbjct 360 TTCCTCTGTGAAACTTTGA 378 > AT2G21895.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein [pseudogene] | chr2:9333002-9333336 REVERSE LENGTH=335 Length=335 Score = 235 bits (127), Expect = 2e-61 Identities = 229/274 (84%), Gaps = 24/274 (9%) Strand=Plus/Plus Query 125 GGCACGGCTCAACGGAGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATC 184 |||| | ||||||||||||||| ||||||||||||| |||||||| ||||||||||| || Sbjct 86 GGCAAGACTCAACGGAGGAGGACTAATGGAGTGTTGAAACGCACTTTACGAGCTCAAGTC 145 Query 185 ATGCACAAACGAAATCGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTG 244 |||||| |||||||||||||| |||||||||||||| || | | || | |||||| | Sbjct 146 ATGCACCAACGAAATCGTTCTCTTCTTCCTCAACGGTGA-AAC-AA--C--CGTCGA--G 197 Query 245 CTGTCAAGCCGTCGAAGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGG 304 ||| | || | | || | | ||||||||||| |||||| | || ||||| || Sbjct 198 --GTC-A----TC--A--C--CA-C-C-GATTGTTGGCCTGCGATGCTCACGTCTCTAGG 241 Query 305 CTTTACCTCTGATGAAACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGG 364 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 242 ATTTACCTCTGATGAAACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGG 301 Query 365 TTCTTCGCCGGCGCCTTCCTCGGTGAAACTTTGA 398 |||||| |||||||||||||| |||||||||||| Sbjct 302 TTCTTCTCCGGCGCCTTCCTCTGTGAAACTTTGA 335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19805493106 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5