BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932118

Length=418
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21750.1 | Symbols:  | Protein of unknown function (DUF1278)...   505    2e-142


> AT2G21750.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr2:9283367-9283744 REVERSE LENGTH=378
Length=378

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 346/381 (91%), Gaps = 6/381 (2%)
 Strand=Plus/Plus

Query  21   ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTTGCCCTCAACGTC  80
            ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  1    ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTCGTTCTCAACGTC  60

Query  81   TCTGGCCGAACACTCCCGGTGGTGGCGGATTCCACCAACATTGCGGCAAGGCTTACCGGA  140
            ||  || || ||||||||   |||||||||||||||||||| ||||| || || ||||||
Sbjct  61   TCCAGCAGAGCACTCCCGCCCGTGGCGGATTCCACCAACATAGCGGCTAGACTAACCGGA  120

Query  141  GGAGGATTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAATCATGCACTAATGAGATC  200
            |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  121  GGAGGACTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAGTCATGTACTAATGAGATC  180

Query  201  GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGCT-CAGGTTGCTGCAACGCTGTTGA  259
            ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct  181  GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGCTAC-GGTTGCTGCAACGCCGTTGA  239

Query  260  CGTCATAACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACATCTG-AGG  318
             ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  240  TGTCATTACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACA-CTGGAGG  298

Query  319  AAACAAACGTCCTCCGTGGTTTCTGCCAGTCTCCGA-CTTCCGGCGGTTCTTCTCCGGCT  377
            |||| || ||||||||||||||||| || ||||||| || |||||||||||||||| |||
Sbjct  299  AAACCAATGTCCTCCGTGGTTTCTGTCAATCTCCGAACT-CCGGCGGTTCTTCTCCAGCT  357

Query  378  CCTTCCCCTGCCGAAGTTTGA  398
            | |||||||| | || |||||
Sbjct  358  CTTTCCCCTGTCAAACTTTGA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19805493106


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5