BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932123

Length=1747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21810.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   508    5e-143


> AT2G21810.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr2:9302254-9302640 FORWARD LENGTH=387
Length=387

 Score =  508 bits (275),  Expect = 5e-143
 Identities = 329/355 (93%), Gaps = 4/355 (1%)
 Strand=Plus/Plus

Query  1206  CATGTGATGAAACCAGTCCTCATGAGTGATCTTGATAAATATCCATGTTGCAAGATCTGT  1265
             ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct  4     CATGTTATGAAACCAGTCCTCATGAGTGCTCTTGATAAATATCCATATTGCAAGATATGT  63

Query  1266  GGAGGAAAAATACTTAGTAATCCATGGAAATGCGAGACCTGCAGCTTCGAGACACATCAT  1325
             |||||||| |||||| |||| ||||||||||| ||||||||| |||||||||||||||| 
Sbjct  64    GGAGGAAACATACTTGGTAACCCATGGAAATGTGAGACCTGCCGCTTCGAGACACATCAG  123

Query  1326  TACTGTGCGGAGCTGGGGCGACCATCAAAACATCGAGTTCATCAGAACCATCCTTTGACA  1385
             ||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  124   TACTGTGTGGAGTTGGGGCGACCATCAAGACATCGATTTCATCAGAACCATCCTTTGACA  183

Query  1386  CTCTTGCCAAAGTATCCTTCACAAGAAAAGATGAAATGTGACGTTTGCAGAGGA-AATAT  1444
             || ||| |||||||||||||||| |||||||||||||||||| |||||||| || |||||
Sbjct  184   CTGTTGACAAAGTATCCTTCACAGGAAAAGATGAAATGTGACATTTGCAGA-GAGAATAT  242

Query  1445  ATACAACTTCAATCTCTTCTGCCGCATATGTGA-TTTTGTTATCCACATCAACTGTGCCT  1503
             |||| | ||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct  243   ATACGATTTCAATCTCTTCTGCCGTATATGT-ACTTTTGTTATCCACATCAACTGTGCCT  301

Query  1504  TGAAAAGTAAACATGTTCTTGAAGCTTTAAGGCAGAAATTCACTGGCACTTGGAG  1558
             |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  302   TGAAAAGTAAACATGTTCTTGAAGCTTTAAGGCAGAAATTCACTGGAACTTGGAG  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 86395137945


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5