BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932125
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21830.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 856 0.0
> AT2G21830.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:9303713-9305897 FORWARD LENGTH=2015
Length=2015
Score = 856 bits (463), Expect = 0.0
Identities = 506/527 (96%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 4 CAATCTTGCTT-ATCACGATGGGGAAACTCGAGCATTTCTCCCATTCATGCCCTTTAACC 62
||||||||||| || | ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 91 CAATCTTGCTTCTTCCCCATGGGAAAACTCGAGCATTTCTCCCACTCATGCCCTTTGACC 150
Query 63 TCGCCGGAGGTTGTATCTGAAGGTATCTGCAACATTTGCTTCAAAGACCAAGTTGTTGAA 122
||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 151 TCGCCGGAGATTGTAGCTGAAGGCATCTGCAACATTTGCTTCCAAGACCAAGTTGTTGAA 210
Query 123 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 270
Query 183 GTGTCACATGATTTTCACTCAGAACATCCTCTAGAGTTTTGTCTATTCCAATATGATCGA 242
|||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 271 GTGTCACATGGTTTTCACTCAGATCATCCTCTTGAGTTTTCTCTATTCCAATATGATCGA 330
Query 243 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 390
Query 303 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAGGAACATTTTCACA 362
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 391 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAAGAACGTTTTCACT 450
Query 363 GGTTGGGACGTTAGAGAAATGCTTCATTACAATCATGAACATTTGCTTCGAAGGTGTAGA 422
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 451 GGTTGGGACGTTAGAGAAATGCTTCATTACAGTCATGAACATTTGCTTCGAAGGTGTAAA 510
Query 423 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTGTCTCCCTCTTCT 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 511 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTTTCTCCCTCTTCT 570
Query 483 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 529
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 617
Score = 388 bits (210), Expect = 4e-107
Identities = 247/265 (93%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 722 CGCCATGAGAGGTAAACGTTTTCTTGGAATGTTAGGGCCGAAAGTCGTTGGAACTTGGAG 781
|||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 1575 CGCCATGAAAGGTAAACGTTTTCTTGGGATGACAGGACCGAAAGTCGTTGGAACTTGGAG 1634
Query 782 AGGACGTTGTTTGGGAGGCAAGCATGGGATGGTTCAAGTTACGTTCCCGAGATCATATCA 841
||||||||||||||||||||||||| | ||||| ||||||| ||||||||| ||||||||
Sbjct 1635 AGGACGTTGTTTGGGAGGCAAGCATAGAATGGTCCAAGTTATGTTCCCGAGGTCATATCA 1694
Query 842 AAAAGTTTGTATTATATGTCATGAGAGAGTGCTTGGGAAAGCTGTGTCATGTATGGAGTG 901
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1695 AAAAGTTTGTATTATTTGTCATGAGAGGGTGCTTGGGAAGGCTGTGTCATGTATGGAGTG 1754
Query 902 TGAAACAG-TTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 960
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 TGAAAC-GATTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 1813
Query 961 CGTAGTTCGGTTGCGCCTCCTCTGA 985
||||||| ||||| ||||||||||
Sbjct 1814 CGTAGTTAGGTTGTTCCTCCTCTGA 1838
Score = 222 bits (120), Expect = 4e-57
Identities = 132/138 (96%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 582 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGTACACCCTCTC 641
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 610 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGAACACCCTCTC 669
Query 642 AGACGCCTTGATTACATACAAAGTGGTGGTCGAACATTTTGTGGTGCATGTAGGGAGGAG 701
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| ||
Sbjct 670 AGACGCCTTGATTACATACGAAGTGGTGGTCGAACATTTTGCGGTGCGTGTAGAGAGAAG 729
Query 702 ATTGACAGTGTCCCCTTT 719
||||||||||||||||||
Sbjct 730 ATTGACAGTGTCCCCTTT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5