BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932129
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21870.1 | Symbols: MGP1 | copper ion binding;cobalt ion bin... 1286 0.0
> AT2G21870.1 | Symbols: MGP1 | copper ion binding;cobalt ion binding;zinc
ion binding | chr2:9320195-9322734 REVERSE LENGTH=1100
Length=1100
Score = 1286 bits (696), Expect = 0.0
Identities = 733/751 (98%), Gaps = 1/751 (0%)
Strand=Plus/Plus
Query 1 CGACTCGATTCGATCAA-GAAATGGCTTACGCTTCTCGTTTCCTCTCCAGATCTAAGCAG 59
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 96 CGACTCGATTCGATCAAGGAAATGGCGTACGCTTCTCGTTTTCTCTCCAGATCTAAGCAG 155
Query 60 TTACAAGGGAGTCTGGCCATTTTGCAGCAGCAACATGCTATTCCAGTCCGAGCTTTTGCA 119
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CTACAGGGGGGTCTGGTCATTTTGCAGCAGCAACATGCTATTCCAGTCCGAGCTTTTGCT 215
Query 120 AAGGAAGCTGCTCGTCCAACCTTTAAAGGAGATGAGATGTTGAAGGGTGTCTTTTTTGAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AAGGAAGCTGCTCGTCCAACCTTTAAAGGAGATGAGATGTTGAAGGGTGTCTTTTTTGAT 275
Query 180 ATCAAGAACAAATTCCAGGCTGCTGTTGATATTCTCCGTAAGGAAAAGATCACCCTTGAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATCAAGAACAAATTCCAGGCTGCTGTTGATATTCTCCGTAAGGAAAAGATCACCCTTGAT 335
Query 240 CCAGAGGACCCAGCTGCGGTAAAACAGTATGCTAATGTAATGAAGACCATCAGGCAAAAG 299
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 336 CCAGAGGACCCAGCTGCCGTAAAACAGTATGCAAATGTAATGAAGACCATCAGGCAAAAG 395
Query 300 GCAGACATGTTCTCAGAATCCCAACGCATTAAACATGACATTGATACTGAGACTCAAGAC 359
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 396 GCAGACATGTTCTCAGAATCTCAGCGCATTAAACATGACATTGATACTGAGACTCAAGAC 455
Query 360 ATTCCAGATGCTCGTGCATACTTGTTGAAGTTGCAGGAAATCCGCACCAGGAGGGGGCTT 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 456 ATTCCAGATGCTCGTGCATACTTGTTGAAGTTGCAGGAAATTCGCACCAGGAGGGGGCTT 515
Query 420 ACTGATGAGCTTGGTGCTGAGGCCATGATGTTCGAGGCTTTGGAGAAAGTCGAGATGGAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 516 ACTGATGAGCTTGGTGCTGAGGCCATGATGTTCGAGGCTTTGGAGAAAGTCGAGAAGGAC 575
Query 480 ATAAAGAAGCCTCTCCTGAGAAGCGACAAGAAAGGAATGGATCTTTTGGTTGCAGAGTTT 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 576 ATAAAGAAGCCTCTCCTGAGAAGTGACAAGAAAGGAATGGATCTTTTGGTTGCAGAGTTT 635
Query 540 GAGAAAGGCAACAAAAAGCTTGGGATTAGGAAAGAAGATCTTCCTAAGTACGAGGACAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 636 GAGAAAGGCAACAAAAAGCTTGGGATTAGGAAAGAAGATCTTCCTAAGTACGAAGAAAAT 695
Query 600 TTGGAGCTCAGCATGGCCAAAGCACAGTTGGATGAGCTGAAGAGTGATGCTGTTGAAGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTGGAGCTCAGCATGGCCAAAGCACAGTTGGATGAGCTGAAGAGTGATGCTGTTGAAGCT 755
Query 660 ATGGAATCTCAGAAAAAGAAGGAGGAATTCCAGGATGAGGAAATGCCGGACGTGAAGTCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATGGAATCTCAGAAAAAGAAGGAGGAATTCCAGGATGAGGAAATGCCGGACGTGAAGTCT 815
Query 720 CTGGACATCCGTAACTTCATCTAAGGTTTGA 750
|| ||||||||||||||||||||||||||||
Sbjct 816 CTAGACATCCGTAACTTCATCTAAGGTTTGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5