BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932132
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96, su... 2300 0.0
AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96, su... 255 7e-67
> AT2G21910.1 | Symbols: CYP96A5 | cytochrome P450, family 96,
subfamily A, polypeptide 5 | chr2:9341498-9343030 FORWARD LENGTH=1533
Length=1533
Score = 2300 bits (1245), Expect = 0.0
Identities = 1443/1539 (94%), Gaps = 12/1539 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTACGTAGGCTTACTTGAAGTCTTTATAGCTTTTCTTGTCTTTATCTTCTTCCAT 80
|||||||||||||||||| ||||||||||||| || || ||||||||| |||||||||||
Sbjct 1 ATGGCTTACGTAGGCTTAGTTGAAGTCTTTATTGCCTTACTTGTCTTTTTCTTCTTCCAT 60
Query 81 TTCTTGATCCACAAGAAAGCCCATCATATCTTACCTAGAAACTGGCCAGTTCTTGGGATG 140
|||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 TTCTTGATCCACAAGAAATCTCATCAAATCACACCTAGAAACTGGCCAGTTCTTGGGATG 120
Query 141 CTTCCTGGTGTGCTCT-TCATGCTTCACATGATTAATGACTACGTCGCAGAGATTCTCGA 199
||||||||||| || | |||||||||||| ||| |||||||| ||||| |||||||| ||
Sbjct 121 CTTCCTGGTGTCCT-TGTCATGCTTCACAGGATCAATGACTATGTCGCGGAGATTCTTGA 179
Query 200 GGTCTCCAACTTGACTTTTGCCTTCAAAGGCCCATGGTTCACTGGAATGAACATGTTGAT 259
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 GGTCTCCAACTTGACATTTGCCTTCAAAGGCCCATGGTTCTCTGGAATGAACATGTTGAT 239
Query 260 CACTGCAGATCCTGCAAATATTCAACACGTTTTCTGCTCCAACTTCTCCAATTATGATAA 319
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 240 CACTGCAGATCCTTCAAATATTCAACACGTTTTCAGCTCCAACTTCTCCAATTACGACAA 299
Query 320 AGGACCGGAGTTCAAAGAGATGTTCGATTTTCTAGGAAATGGGATCTTCACTGCTGACTC 379
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGGACCGGAGTTCAAAGAGATGTTTGATTTTCTAGGAAATGGGATCTTCACTGCTGACTC 359
Query 380 CAAACTCTGGGAGGATATGAGGAAATCCGCACTGGTTGTGCTTAGCCATCAAGGGTTTCA 439
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 CAAACTATGGGAGGATATGAGGAAATCCGCATTGGTTGTGCTTAGCCATCAAGGGTTTCA 419
Query 440 AAGCTTCTCATTGAGGACCATCACGCGTAAAATCAAGAATGGGCTTGTCCCGGTTCTTGA 499
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 420 AAGCTTCTCATTGAGGACCATCACGTGTAAAATCAAGAACGGGCTTGTCCCCGTTCTTGA 479
Query 500 TCATTTTTCAGAGGCGAATACGGTTTTCGATTTACAAGACGTGTTCCAAAGATTAGCATT 559
||||||| | ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TCATTTTGCGGAGGCTAATACGGTTTTCGATTTACAAGACGTGTTCCAGAGGTTAGCATT 539
Query 560 CGATGTAACCCTTACTCTTGTTACGGGTTATGACTCGAGTTCTCTTTCCATAGAAATGCC 619
|||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||
Sbjct 540 CGATGTAACCCTTACTCTGGTTACGGGTTGTGACTCAAGTTCTCTTTCCATTGAAATGCC 599
Query 620 GAAGAATGAGTATGCGAAAGCTATGGATGATGCTGAAGAAGTGGTTGTGTATAGACATGT 679
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 AAAGAATGAGTATGCTAAAGCTATGGATGATGCTGAAGAAGTGGTTGTGTACAGACATGT 659
Query 680 TAAGCCTCTGATCTTGTGGAAGTTGCAAAACTGGTTTGGACTCGGACAAGAGAAGAAGAT 739
|||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 660 CAAGCCTGTGGTCTTGTGGAAGCTGCAAAACTGGATTGGACTCGGAGAAGAGAAGAAGAT 719
Query 740 GACA-AAAGCTAATGCTGCTTTCGACAGATCTTGTGCAAAGTATATATCTGCAAAGAGAG 798
|| | |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 720 GA-AGGAAGCTAATGCCGCTTTTGACAGATCTTGTGCAAAGTATATATCTGCAAAGAGGG 778
Query 799 AGGAGATAATAAGTCATCATTCTAATATTGGGGGAAAAGCTCGTGAAGAGGATTTATTAA 858
||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||||||
Sbjct 779 AGGAGATAATAAGTCATCATTCTAATATTGGAGGAGAAGCTCATGCAGAGGATTTATTAA 838
Query 859 GCGTCTACATGAATCTAGATACTTCCAAGTATGAGCTTTTGAACCCAGAA-GATGATAAC 917
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 839 GCGTCTACATGAATCTAGATATTTCCAAGTATGAGCTTTTGAACCCA-AACGATGATAAC 897
Query 918 TTCCTCAAAGACATCATCAAGAGTTTCATGCTCGCCGGAAGAGACGCCATTGCAACAACT 977
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 898 TTCCTTAAAGACATCATCAAGAGTTTCATGCTTGCTGGAAGAGACGCCATTGCAACAACT 957
Query 978 CTCACTTGGTTCTGT-TGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCCA 1036
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTCACTTGGTTCT-TCTGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCCA 1016
Query 1037 AGAGATCAACACAAATCTACCAGGATCCGGAATGAGTTTAGATGCAGACATGTTAAACAA 1096
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 AGAGATCAACACAAATCTACCAGGATCCGGAATGAGTTTAGATGCAGACAAGTTAAACAA 1076
Query 1097 GATGGTGTATTTACATGGTGCATTGTGTGAATCACTACGCCTCTACGCTCCAATCCCATT 1156
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1077 GATGGTATATTTACATGGTGCATTGTGTGAATCACTACGCCTCTACGCGCCAATCCCGTT 1136
Query 1157 CGAGCGAAAGACTCCCATAAAACAAGATGTGCTTCCAAGTGGACACAAAGTCGATGCAAA 1216
|||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 1137 CGAGAGAAAGACTCCCATAAAGCAAGATGTGCTTCCAAGTGGACACATGGTCGATAAAAA 1196
Query 1217 TTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGAAGG-CTGTGTGGGGAGAAG 1275
||||||||||||||||||||||||||||||||||||||||| || | ||||||||| | |
Sbjct 1197 TTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGA-GGTCCGTGTGGGGACAGG 1255
Query 1276 ACGCATGTGAATTCAAACCAGAGAGATGGATTTCTGAGAGAAATGGAGGCTT-AAAGCAT 1334
|||| | |||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1256 ACGCGTCTGAATTCAAACCAGAGAGATGGATCTCTGAGAGAAATGGAGGCTTGAAA-CAT 1314
Query 1335 GAACCATCTTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAATTGCTTGGGGAAAAGT 1394
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1315 GAACCATCTTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAACTGCTTGGGGAAAAAT 1374
Query 1395 TTATCTTTCTTGCAGATGAAGACAGTGGCTATTGAGATTATACGAAATTATGACATCAAG 1454
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1375 TTATCTTTCTTGCAGATGAAGACAGTAGCTGTTGAGATCATACGAAATTATGACATCAAG 1434
Query 1455 GTCGTTGAAGGGCACAAGATCGAGCCAGCTTCTTCCATAGTCCTTCACATGAAACATGGC 1514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1435 GTCGTTGAAGGGCACAAGATCGAGCCAGCTTCTTCCATAATCCTTCACATGAAACATGGC 1494
Query 1515 CTCAAAGTCACAGTTGCTAAGAGATGCTTGGTCTCATAA 1553
|| |||||||||||| |||||||| ||||||| ||||||
Sbjct 1495 CTTAAAGTCACAGTTTCTAAGAGAGGCTTGGTTTCATAA 1533
> AT1G65340.1 | Symbols: CYP96A3 | cytochrome P450, family 96,
subfamily A, polypeptide 3 | chr1:24268135-24269646 REVERSE
LENGTH=1512
Length=1512
Score = 255 bits (138), Expect = 7e-67
Identities = 424/557 (76%), Gaps = 39/557 (7%)
Strand=Plus/Plus
Query 978 CTCACTTGGTTCTGT-TGGCTTCTCTCCAAGAACCCTGAAGCTGTGACCAAGATCCGCCA 1036
||||||||||||| | |||||| | |||||||||||||| || | | ||||||||| ||
Sbjct 964 CTCACTTGGTTCT-TCTGGCTTATGTCCAAGAACCCTGAGGCAATAAACAAGATCCGACA 1022
Query 1037 AGAGATCAACACAAATCTACCAGGAT-CCGGAATGAGTTTAGATGCAG-ACATGTTA-AA 1093
|||| | | || || | | ||| || | | | |||| ||| | | | || ||| ||
Sbjct 1023 AGAGGT-TA-AC-AA--GA--A-GATGCC-G-A-G-GTTT-GATCCCGCAGAT-TTAGAA 1068
Query 1094 CAAGATGGTGTATTTACATGGTGCATTGTGTGA-ATCACTACGCCTCTACGCTCCAATCC 1152
||| | |||||| |||| ||||| ||||||| | | ||| | | ||| | ||| | |
Sbjct 1069 -AAGCTCGTGTATCTACACGGTGCCGTGTGTGAGA-CGCTAAGGTTATACCCACCAGTTC 1126
Query 1153 CATTCGAGCGA-AAGACTCCCATAAAACAAGATGTGCTTCCAAGTGGACACAAAGTCGAT 1211
|||| | | | ||| | || ||| | ||| || ||||||||||| || | ||| |||
Sbjct 1127 CATT-TAACCACAAGTCACCGGCAAAGCCAGACGTACTTCCAAGTGGGCATAGAGTAGAT 1185
Query 1212 GCA-AATTGGAAGATTTTGTTCTCTGTCTATGCATTGGGGAGGATGAAGGCTGTGTGGGG 1270
| | || ||||||||| | | ||| | |||||||| ||||||||||| |||| |||||
Sbjct 1186 G-AGAAATGGAAGATTGTCATATCTATGTATGCATTAGGGAGGATGAAATCTGTTTGGGG 1244
Query 1271 AGAAGACGCATG-TGAATTCAAACCAGAGAGATGGATTTCTGAGAGAAATGG-AGGCTTA 1328
||| |||||| | || |||| |||||||||||||||||| ||| | ||| ||| |||
Sbjct 1245 AGATGACGCA-GAAGATTTCAGACCAGAGAGATGGATTTC--AGA-CAGTGGAAGG-TTA 1299
Query 1329 AAGCATGAACCATC-TTTCAAGTTCTTCGTGTTTAATTCTGGTCCAAGAAATTGCTTGGG 1387
|| |||||||| || | | |||||||| | |||||| | ||||||||| |||||||||
Sbjct 1300 AAACATGAACCTTCATAT-AAGTTCTTGGCGTTTAACGCCGGTCCAAGAGCTTGCTTGGG 1358
Query 1388 G-AAAAGTTTATCTTTCTTGCAGATGAAGACAGTGGCTATTGAGATTATACGAAATTATG 1446
| ||||| ||| | ||||| |||||||||||||||||| || || |||||||| ||||
Sbjct 1359 GAAAAAG-TTAACGTTCTTACAGATGAAGACAGTGGCTGCGGAAATCATACGAAACTATG 1417
Query 1447 ACATCAAGGTCGTTGAAGGGCACAAGATCGAGCCAGCTTC-TTCCATAGTCCTTCACATG 1505
||||||||||||||||||||||||| | ||| |||| ||| ||| | | ||| |||
Sbjct 1418 ACATCAAGGTCGTTGAAGGGCACAAAACCGAACCAG-TTCCTTCTGTTCTTTTTCGTATG 1476
Query 1506 AAACATGGCCTCAAAGT 1522
||||||| ||||||||
Sbjct 1477 CAACATGGTCTCAAAGT 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5