BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932133

Length=1214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21930.1 | Symbols:  | F-box associated ubiquitination effec...   322    5e-87
  AT2G21920.1 | Symbols:  | F-box associated ubiquitination effec...  60.2    4e-08


> AT2G21930.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr2:9347641-9349128 REVERSE LENGTH=1488
Length=1488

 Score =  322 bits (174),  Expect = 5e-87
 Identities = 409/517 (79%), Gaps = 38/517 (7%)
 Strand=Plus/Plus

Query  448  AACCCTAGCACTAGACGATCCATTACTCTT-CCCAAGATTGATTCTCAAAGGATTAAT--  504
            ||||||||||||||||||||||||| || | |||||||||||| || ||   || |||  
Sbjct  421  AACCCTAGCACTAGACGATCCATTA-TCCTGCCCAAGATTGATGCT-AATC-ATGAATGT  477

Query  505  ATGTACCACTTCCTA-GG-TTATGATCCCATCCATGGTGATTACAAAGTTTTGTGTATGA  562
            || ||||||  | || || ||||||||| ||  |||||||||||||||| ||||||||||
Sbjct  478  ATATACCAC--CATATGGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATGA  535

Query  563  C-AGTTGGAATGCATGTTTATAA-AGGACGTGGTATG--GCTCAAG-AGCTTCGGGTTTT  617
              |   || |||||||||||| | || ||| | |||   ||| ||| |||||| ||||||
Sbjct  536  TGAAA-GGCATGCATGTTTATCAGAG-ACG-G-TATTTAGCT-AAGGAGCTTCAGGTTTT  590

Query  618  GACTTTGGGAAATGGGAATTCTTGGAGGTTGATTGAAGATTTTCCTCCTCATTTTCT-TG  676
             |||||| |||| ||||||||||||||| || ||||||||||||||||||| | ||| ||
Sbjct  591  CACTTTGAGAAAAGGGAATTCTTGGAGGATGGTTGAAGATTTTCCTCCTCACTGTCTCTG  650

Query  677  ATTATCATTATTCTCCTGATATATGTATCAATGGTGTTTTGTATTATGGAGCTCTGCTCG  736
             | || |  || |||||||| | ||||||||||||||||||||||||| |||| ||||||
Sbjct  651  -TCATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTCG  709

Query  737  ACATAAAG-CGAC-CA-GCAGTCATGAGTTTTGATGTTAAATCTGAAAAATTTCATCATA  793
            ||| |    |||  || ||||||||||| |||||||||| ||||||||| ||| ||| ||
Sbjct  710  ACACAGCTTCGAATCATGCAGTCATGAGCTTTGATGTTAGATCTGAAAAGTTTGATCTTA  769

Query  794  TTAAAGGA---CCAGACTGTGACTTGCGTCCAAAGCTGAAAAGCTTCAACGGAAAGCTTG  850
            ||||||||   |||||| | ||||||  ||||||||||| | ||| | | ||||||| ||
Sbjct  770  TTAAAGGAGGACCAGACGGGGACTTGAATCCAAAGCTGACACGCTACGAGGGAAAGCCTG  829

Query  851  TAGC-CCTGTTCTC-T--A-CTAATGGTGGATTTGAGTTGTGGGCTCTAGAGGATGCTGC  905
             | | |||||| || |  | || ||  | || || | ||||||| | |||||||||||||
Sbjct  830  CA-CTCCTGTT-TCCTGGATCTGATTATAGAATTAACTTGTGGGTTATAGAGGATGCTGC  887

Query  906  GAAACATGAATGGGCAAAGAAGT-T-ATT-TGTTTCG  939
             ||||| |||||| | |||| || | ||  |||||||
Sbjct  888  AAAACACGAATGGTCCAAGATGTCTTATGATGTTTCG  924


> AT2G21920.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr2:9343410-9347159 REVERSE LENGTH=837
Length=837

 Score = 60.2 bits (32),  Expect = 4e-08
 Identities = 48/55 (87%), Gaps = 3/55 (5%)
 Strand=Plus/Plus

Query  884  TGTGGGCTCTAGAGGATGCTGCGAAACATGAATGGGCAAAGAA-G-TTAT-TTGT  935
            |||||  |||||||||||||||||||||||||||| | ||||| | |||| ||||
Sbjct  149  TGTGGATTCTAGAGGATGCTGCGAAACATGAATGGTCGAAGAAAGCTTATGTTGT  203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59638247460


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5