BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932134

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38870.1 | Symbols:  | F-box and associated interaction doma...  67.6    1e-10


> AT4G38870.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:18132583-18133863 REVERSE LENGTH=1281
Length=1281

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 51/58 (88%), Gaps = 2/58 (3%)
 Strand=Plus/Plus

Query  21   ATGAGTCAAGCAATCATGAGTTTTGATGTTAGGTCTGAAAAGTTTCTTCTTGT-AAAG  77
            |||||||  |||||||||||||||||||||||||||||||| |||  |||| | ||||
Sbjct  821  ATGAGTC-TGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGATCTTATCAAAG  877



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5