BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932137
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21930.1 | Symbols: | F-box associated ubiquitination effec... 1295 0.0
> AT2G21930.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:9347641-9349128 REVERSE LENGTH=1488
Length=1488
Score = 1295 bits (701), Expect = 0.0
Identities = 1039/1195 (87%), Gaps = 51/1195 (4%)
Strand=Plus/Plus
Query 30 CAGAGATCGAAGAAGATGAAGAAGATCTCCGATGATCTGATAACATGCAGAGCAAACCCA 89
|||||||||||| | | || |||||| ||||||||||| || |||||||| | |||| |
Sbjct 1 CAGAGATCGAAG-A-A-GACGAAGATATCCGATGATCTAATTACATGCAGTGGAAACTCG 57
Query 90 GTTCAGATTCCGTTTGACCTAATCCCGGAGATACTCAAAGGGTTACCAGTCAAAACCCTA 149
||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||||
Sbjct 58 GTTCAGATTCCGTTTGATCTCATCCCGGAGATACTCAAAAGGTTACCTGTCAAAACCCTA 117
Query 150 GCTAGGTTCCTCTCTC-TATCGAAAGAATATACTTCCATCATTCGCAACCGAGACTTCAT 208
|||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 118 GCTAGGTTCCTCTC-CGTATCAAAAGAATATACTTCCATCATTCGCAACAGAGACTTCAT 176
Query 209 GAAATCGTACTTGATCAAGTCTTCGACTCGCCCGCAAAGTCTCATCTTCACAATCGCTGG 268
||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 177 GAAATCGTACTTGATTAATTCTTCGACTCGCCCACAAAGTCTCATCTTTACAATCGCAGG 236
Query 269 CAACGGGAA-GCATTGCTTCTTCTCATTGCTTGATCAAGGTGAATCAACTTCATCTTCTG 327
| | |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 237 CGGC-GGAATCCATTGCTTCTTCTCCTTGATTGATCAAGGTGAATCAACTTCGTCTTCTA 295
Query 328 TACCAACTTACCTTATGAATTGCCAGGATCT--A-TTTAGAACCGTTGCTCCTTCTGTTC 384
||||||||||||||||||||||| |||| | ||| |||| |||||||||||||||
Sbjct 296 AACCAACTTACCTTATGAATTGCCCTCATCTACAGCTTAAAACCTTTGCTCCTTCTGTTC 355
Query 385 ACGGTCTGATTTGCCATGGA----C--CT-C-C------T-TCTA-----A-ACTAATAG 423
||||| |||||||||||||| | || | | | |||| | ||||||||
Sbjct 356 ACGGTTTGATTTGCCATGGACCTCCTTCTACACTAATAGTGTCTAGCCCTAGACTAATAG 415
Query 424 TATCTAACCCTAGCACTAGAAGATCCAAAATCCTTCCCAAGATTGATACTCA-GAGTGTA 482
|||||||||||||||||||| |||||| ||||| |||||||||||| || | | || |
Sbjct 416 TATCTAACCCTAGCACTAGACGATCCATTATCCTGCCCAAGATTGATGCTAATCA-TGAA 474
Query 483 TCTATATACCACCATATAGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATG 542
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGTATATACCACCATATGGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATG 534
Query 543 ATCAAAGGCATGCATGTTAAAT-GGGGACGGTATTTAGCTCAGGAGCTTCGGGTTTTGAC 601
|| ||||||||||||||| || | |||||||||||||| ||||||||| |||||| ||
Sbjct 535 ATGAAAGGCATGCATGTT-TATCAGAGACGGTATTTAGCTAAGGAGCTTCAGGTTTTCAC 593
Query 602 TTTGAG-AAAGCGGACTTCTTGGATGG-TGATTGAAGATTTTCCTCCTCACTGTCTTTGT 659
|||||| |||| ||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 594 TTTGAGAAAAG-GGAATTCTTGGA-GGATGGTTGAAGATTTTCCTCCTCACTGTCTCTGT 651
Query 660 TATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTTGAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 CATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTCGAC 711
Query 720 ACAGCCGCGAATCATGCAGTCATGAGTTTTGATGTTAGATCTGAAAAATTTCATCTTATT 779
||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 712 ACAGCTTCGAATCATGCAGTCATGAGCTTTGATGTTAGATCTGAAAAGTTTGATCTTATT 771
Query 780 AAAGGAGGACCAGACCATGACTTCCGTCCAAAGCTGACACGCTATGAGGGAAAGCCTACA 839
||||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||
Sbjct 772 AAAGGAGGACCAGACGGGGACTTGAATCCAAAGCTGACACGCTACGAGGGAAAGCCTGCA 831
Query 840 CTCCTGTTTCCTGGAATTGCTGATTGTAGAATTCATTTGTGGGTTCTAGTGGATGCTGCA 899
||||||||||||||| | |||||| ||||||| | ||||||||| ||| ||||||||||
Sbjct 832 CTCCTGTTTCCTGGA-T--CTGATTATAGAATTAACTTGTGGGTTATAGAGGATGCTGCA 888
Query 900 AAACATGAATGGTCCAAGATGTCTTATGATGTTTTGTCTAC---ACTAGTTCACAGTCCT 956
||||| |||||||||||||||||||||||||||| |||||| |||| ||| || ||||
Sbjct 889 AAACACGAATGGTCCAAGATGTCTTATGATGTTTCGTCTACTTCACTAATTCGCAATCCT 948
Query 957 TACTTTCATCACTATCTCTTTTGTACTAATGATGCAGGGGAGATTGTTTTGGCACCTGAC 1016
||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 949 TACTTTCATCATTGTGTCTTTTGTACTAATGATGCAGGGGAGATTGTTTTGGCACCCGAC 1008
Query 1017 TATGTGCGTTCAAAAACATTTGAAGTTCTCTT-TTATCATCCAAAGaaaaaaaCTATGAG 1075
| ||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||||
Sbjct 1009 TTTGTGCGTACAAAAACATTTGTTGTTCT-TTATTATCATCCAAAGAAAAATACTATGAG 1067
Query 1076 AAGTGTGGTCATACAA-GGAATCAGAGAACTAATGGTTCCGCGTTGGGACAAGGAT-CGA 1133
|||||| ||||| ||| ||||||||||| | || | |||| | |||||| ||| | | |
Sbjct 1068 AAGTGTCGTCAT-CAAAGGAATCAGAGATCGAAAGATTCCACTTTGGGATGAGGCTTC-A 1125
Query 1134 TATCTTCGTATAATCTCCGTCTTCTCTGGTCAGGTTGATAATCTCATGTTTCTCT 1188
|| | | | |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1126 TACCATAGGATAATCTCGGTCTTCTCTGGCCAGGTTGATAATCTCATGTTTCTCT 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5