BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932140
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21960.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1679 0.0
> AT2G21960.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to
222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa
- 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink). | chr2:9354842-9357091 FORWARD
LENGTH=1280
Length=1280
Score = 1679 bits (909), Expect = 0.0
Identities = 1005/1051 (96%), Gaps = 7/1051 (1%)
Strand=Plus/Plus
Query 2 TTTTCTTGAGAA--TTTTTTGAAGAAG-TATGATTGCATTAACTGTTTCTTCGTTGGGGA 58
|||||||||||| |||||||||| || ||||||||||||| ||| ||||||||||||||
Sbjct 121 TTTTCTTGAGAACTTTTTTTGAAG-AGTTATGATTGCATTAGCTGCTTCTTCGTTGGGGA 179
Query 59 ATACTCCGATTGCTACGTTTAACCGGCGTTTCAGATTCCGGTTACATCCACGAAACCCTC 118
|||| ||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 180 ATACACCGATTGCTTCGTTTAACCGTCATTTTAGATTCCGGTTACATCCACGAAACCCTC 239
Query 119 CGATACAAGCAGCGGTTTCTCCTTCTTCATCCTCTTCTTCTTCTCCTACTGCTGCATCTG 178
|||||||||||||||||| ||||| || | ||||||||||||||||||||| ||||||
Sbjct 240 TGATACAAGCAGCGGTTTCACCTTCGTC-T--TCTTCTTCTTCTCCTACTGCTTCATCTG 296
Query 179 GGTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 356
Query 239 AAGCTCTAGATAAATTGAATGAACAAGGTTGGGCTAAGAAATGGAGTTCCCAGCCGTATC 298
||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 357 AAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATC 416
Query 299 TTTCGCGCCGTACGACATCGCTTCGGGAGCTGACAACTCTCGGAATCAAGAATGCAGAGA 358
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 417 TTTCGCGCCGTACGACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGA 476
Query 359 CTCTTGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACGGTAGTCGGAACAA 418
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 477 CTCTGGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACAGTAGTCGGATCAA 536
Query 419 CCGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 596
Query 479 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCTGTGGGAAGCGTTTCACCAGGGCTTC 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGGCTTC 656
Query 539 TTCAAGCTGCGATTTCCGGGTTTTCTACGTTCTTCCCTGATTATCAAGAAAGAATTGCTG 598
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 657 TTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCAAGAACGAATTGCTG 716
Query 599 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGACTTCCAATCCTCGGGTACT 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGGCTTCCAATCCTCGGGTACT 776
Query 659 CCTTAGACATCGGTAAAGAACACGTCAATCTCATCGACGAGAGACTAGCTAAACTAATAT 718
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 777 CGTTAGACATCGGTAAAGAACATGTCAATCTCATTGACGAGAGACTAGCTAAACTAATAT 836
Query 719 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 896
Query 779 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTGATCGGCCAATCTGCAGATCTCTTCTCTC 838
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 897 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTC 956
Query 839 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 1016
Query 899 CAAGATGGGCTGTTCTCTACTCTGCTTCTCTTCTCAAAAACAACAAGAACATCCATGAAG 958
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 CAAGATGGGCTGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAG 1076
Query 959 CTCTAATGGCTGCAATGTCCAAAAATGCAACTGTTCTTGAATGCATTCAAACCATCGAGA 1018
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1077 CTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAACCATTGAGA 1136
Query 1019 CAGCTTCCTAGATAAACAATCTCGGTTCTCT 1049
||||||||||||| ||||||||| ||| |||
Sbjct 1137 CAGCTTCCTAGATGAACAATCTCTGTTATCT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5