BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932171

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   289    2e-77


> AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14296994-14300506 
FORWARD LENGTH=1401
Length=1401

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 197/216 (91%), Gaps = 5/216 (2%)
 Strand=Plus/Plus

Query  75   CTCCAGGACG-ATTCCGATGTCAATGTTTTTAGCGATCTCAAAGAAATCATGTCGGCGTT  133
            |||| ||||| |||  |||||| |||||| ||||||| |||||| |||||||||||||||
Sbjct  195  CTCCCGGACGAATT-GGATGTCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTT  253

Query  134  GCAGCAAATCAGAGAGAAAGCGCACGAAGATGCCCGGAAGCAGAAGGAAGAGAGCATCTC  193
            ||||||| |||||||||||||||||||||||| ||| ||| |||||||||| ||||| ||
Sbjct  254  GCAGCAATTCAGAGAGAAAGCGCACGAAGATGGCCGTAAGAAGAAGGAAGAAAGCATTTC  313

Query  194  CAGTGTCTCCACTGAGGTGAAGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGA  253
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  CAGTGTGTCCACTGAGGTGAAGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGA  373

Query  254  AAGACAAAA-TTTCGCCAAAGCACTTTCAAATGAGT  288
            ||||||||| |||  |||||||||||||||| ||||
Sbjct  374  AAGACAAAACTTTT-CCAAAGCACTTTCAAA-GAGT  407


 Score =  274 bits (148),  Expect = 6e-73
 Identities = 183/199 (92%), Gaps = 5/199 (3%)
 Strand=Plus/Plus

Query  349  GGAAGAAGGAGGAGACAATGATAACGGAACACGAGAAGTTCTGCACTGAAAAGCTTGCTC  408
            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  571  GGAAGAAGGAGAAGACAATGATAACGGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTC  630

Query  409  AATTGGAAGAGTCCCTGAAGAAAAAGAAACTGGATGACGAAAA-TTTCACCATACTGAGG  467
            ||||||||||||| |||||||||||||||| || |||| |||| ||||| ||||||||||
Sbjct  631  AATTGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGAC-AAAACTTTCAGCATACTGAGG  689

Query  468  AAAACTCTCGGCTCTTTTCTGGAGAACGAAGCCTCTGATGAAGAATACCCACCTGATGAG  527
            ||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||
Sbjct  690  AAAACTCTCGGCTCTTTTCTGGAAAACGAGGCTTCTGATGAGGAATTCCCACCTGATGAG  749

Query  528  TGAAAGATCGTTAACGTCT  546
            ||||||||  | |||||||
Sbjct  750  TGAAAGAT--T-AACGTCT  765


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 75/77 (97%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  1    CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCAGTAAGAGAACTCGGCCAG  60
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  94   CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG  153

Query  61   ATCCGCCGCAATCGCTC  77
            | |||||||||||||||
Sbjct  154  AGCCGCCGCAATCGCTC  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5