BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932172

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 a...   305    1e-82


> AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 
and DUF3411) | chr3:20829282-20832871 FORWARD LENGTH=2565
Length=2565

 Score =  305 bits (165),  Expect = 1e-82
 Identities = 186/196 (95%), Gaps = 2/196 (1%)
 Strand=Plus/Plus

Query  15   AAGCTGATGAATGCGAGAGCTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC  74
            |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  588  AAGCTGTTGAACGCGAGAGTTGTGTACCTCGGTGAGGCGGAGCAAGTGCCTACCAAAGAC  647

Query  75   GACAAAGAGCTTGAACTCGAAATCGTTAGAAACTTGAGGAAGAGATGCGTTGAGAGCCAG  134
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  648  GACAAAGAGCTTGAACTCGAAATCGTTAGAAACCTGAGGAAGAGATGCGTTGAGAGCGAG  707

Query  135  CGTCAAATATCTGTAGCAGTGGAAGCATTCCCTCTCGAATTT-CAGGACCAGCTTAATCA  193
            |||||||| ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||
Sbjct  708  CGTCAAATCTCTGTAGCACTGGAAGCATTCCCTCTCGA-TTTGCAGGATCAGCTTAATCA  766

Query  194  ATACATGGATAAGAGG  209
            ||||||||||||||||
Sbjct  767  ATACATGGATAAGAGG  782



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5