BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932173

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2k...   257    3e-68


> AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa 
subunit | chr3:705381-707651 REVERSE LENGTH=736
Length=736

 Score =  257 bits (139),  Expect = 3e-68
 Identities = 155/162 (96%), Gaps = 3/162 (2%)
 Strand=Plus/Minus

Query  23   GAAGCCTTCTTCTCGGATCATCCTCATGAAACCGCCGAGACCTTTCTCTCTAATCGCCTC  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  163  GAAGCCTTCTTCTCGGATCATCCTCATGAAACCGCCGAGACCTTTCTCTCTAATCGCCTC  104

Query  83   CAACGCACTCTACGCCACCGTCAAAGCCATCG-CTTCCGCTA--GctctctctctctcGG  139
            ||||||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||
Sbjct  103  CAACGCACTCTTCGCCACCGTCAAAGCCATCGTCTTCCGCTATCGCTCTCTCTCTCTCGG  44

Query  140  AATCGGGATTCGATTTCGGTATCGAAATAACAAGGGACATGA  181
            |||||||||| ||||||| | |||||||||||||||||||||
Sbjct  43   AATCGGGATTTGATTTCGTTGTCGAAATAACAAGGGACATGA  2



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5