BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932176

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22155.1 | Symbols:  | Encodes a ECA1 gametogenesis related ...   191    2e-48


> AT2G22155.1 | Symbols:  | Encodes a ECA1 gametogenesis related 
family protein | chr2:9423869-9424174 FORWARD LENGTH=306
Length=306

 Score =  191 bits (103),  Expect = 2e-48
 Identities = 130/142 (92%), Gaps = 5/142 (4%)
 Strand=Plus/Plus

Query  21   ATGGAATCGAGGACGATGAAGATTAT-ATTTTATCTTATGGtttttgtttttg---tttt  76
            |||||||| | ||||||||||||||| ||||| ||||||||||||||||||||   |   
Sbjct  1    ATGGAATCTAAGACGATGAAGATTATAATTTT-TCTTATGGTTTTTGTTTTTGCAATGAC  59

Query  77   ttGGGATCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG  136
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TTGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG  119

Query  137  CACATCAAGAGGATGTCTCGAA  158
            ||||||||||||||||||||||
Sbjct  120  CACATCAAGAGGATGTCTCGAA  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9751943306


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5