BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932180

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22155.1 | Symbols:  | Encodes a ECA1 gametogenesis related ...   521    1e-147


> AT2G22155.1 | Symbols:  | Encodes a ECA1 gametogenesis related 
family protein | chr2:9423869-9424174 FORWARD LENGTH=306
Length=306

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 298/306 (97%), Gaps = 0/306 (0%)
 Strand=Plus/Plus

Query  24   ATGGAAACTAAGACGATGAAGATTATAttttttcttatggtttttgtttttGCAATGACT  83
            |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAATCTAAGACGATGAAGATTATAATTTTTCTTATGGTTTTTGTTTTTGCAATGACT  60

Query  84   TGGTTTCCTACGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC  143
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC  120

Query  144  ACATCAAGAGGATGTCTTGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATT  203
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  ACATCAAGAGGATGTCTCGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATC  180

Query  204  AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATGTGTGTTGGCCAATAATTTTC  263
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATATGTGTTGGCCAATAATTTTC  240

Query  264  CCAAGCATGCCTTACATCCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG  323
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCAAGCATGCCTTACATTCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG  300

Query  324  CATTGA  329
            ||||||
Sbjct  301  CATTGA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5