BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932182
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22180.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1419 0.0
> AT2G22180.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr2:9428743-9429844 FORWARD LENGTH=1102
Length=1102
Score = 1419 bits (768), Expect = 0.0
Identities = 858/899 (95%), Gaps = 15/899 (2%)
Strand=Plus/Plus
Query 1 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 266
Query 61 AATCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCCAGCC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 267 ACTCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCTAGCC 326
Query 121 TCCCCGCATTGCCATCTCTAGA---TCC-TC-CA----TCACACCATTGGCGTAATCATT 171
||||||||||||||||| |||| ||| || || ||||||||||||||||||||||
Sbjct 327 TCCCCGCATTGCCATCTTTAGATCCTCCATCGCACGGTTCACACCATTGGCGTAATCATT 386
Query 172 CTCTTAATCTCTCTCCACTCCCAACGACATCTTCTCCGTCTCTTCCTCCTCCGGATTCAA 231
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 387 CTCTTAATCTGTCTCCACTCCCAACGACATCTTCTCCGCCTCTTCCTCCTCCGGATTCAA 446
Query 232 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCAAGAGATCAAGTCTATTGGACCCCTC 291
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 447 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCGAGAGATCAAGTCTATTGGACCCCTC 506
Query 292 CTCCGGAACATGCAAAATACGTCGAAAAACGCCGCAAGAACCCGGAGAAAAACAAAAAGA 351
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 507 CTCCGGAACATGCAAAATACGTCGAGAAACGCAGCAAGAACCCGGAGAAAAACAAAAAGA 566
Query 352 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTCATT- 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 567 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTC-TTA 625
Query 411 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 685
Query 471 GTCGAAAGATTAACCGTAAAACCTAGTAATTTCGAGGTCACGTTGAGAGCTGAGAATCCA 530
||||| ||||| |||||||| ||||||||||| |||||||| || ||||| |||||||||
Sbjct 686 GTCGAGAGATTGACCGTAAATCCTAGTAATTTTGAGGTCACATTAAGAGCCGAGAATCCA 745
Query 531 ACGTCTAACATGGGGGTACGCTACATGATGAAAAAGAACGGGGTCGTTTCCTTAACGTAC 590
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 746 ACGTCTAACATGGGAGTACGCTACATGATGGAAAAGAACGGGGTCGTTTCCTTAACGTAC 805
Query 591 AAGAATAAGAGCCT-GGGAGGCGGGACATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 649
|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 806 AAGAATAAGAGCCTGGGGA-GCGGGAAATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 864
Query 650 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 924
Query 710 CTCGAAGCTACCG-TTGGTTATGATGCTGAAGATGGAGCTGAATGCTGAGTATGAAGCAG 768
||||||| |||| ||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 925 ATCGAAGCAACCGGTTG-TTCTGATGCTGAATATGGAGCTGAAGGCTGAGTATGAAGCAG 983
Query 769 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATCTGAAGGTTAAGGGACTAT 828
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 984 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATGTTAAGGTTAAGGGACTAT 1043
Query 829 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAAAGTGAGTTCAAGAACTGA 887
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1044 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAGAGTGAGTTCAAGAACTGA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5