BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932184
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22200.1 | Symbols: | Integrase-type DNA-binding superfamil... 826 0.0
AT3G52930.1 | Symbols: | Aldolase superfamily protein | chr3:1... 313 3e-84
> AT2G22200.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:9443128-9444423 REVERSE LENGTH=1296
Length=1296
Score = 826 bits (447), Expect = 0.0
Identities = 689/796 (87%), Gaps = 56/796 (7%)
Strand=Plus/Plus
Query 4 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTCCTTTCCCTGTCCCAAACACGAGCT 63
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 200 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTTCTTTCCCTGTCCCAAACACGAGCT 259
Query 64 TCGGTTTAAACCAACCTAAACCTCTTGGTCTAAACCAGCTCACACCATACCAAATTCATC 123
||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 260 TCGGTGTAAACAAATCTATGCCTCTCGGTCTAAACCAGCTCACACCATACCAAATTCATC 319
Query 124 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAACCTCAAACCTCTCTCCAAAACCA- 182
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 320 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAATCTCAAACCTCTCTCCAAA-CCGT 378
Query 183 ATCCGAATGAAGAACTTCTCACCTTCTTCCTCCAAAACCAAGAATCTCTACAGAGGCGTA 242
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 ATCAGAATGAAGAACTTAACACCTTCTACCTCCAAAACCAAGAATCTCTACAGAGGCGTA 438
Query 243 AGACAAAGGCACTGGGGAAAATGGGTCGCTGAGATCCGCTTGCCCAAGAACCGGACCCGT 302
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 439 AGGCAAAGGCACTGGGGGAAATGGGTCGCTGAGATCCGTTTGCCCAAGAACCGGACCCGT 498
Query 303 CTCTGGCTCGGAACATTCGAAACTGCTGAAGAAGCCGCCTTGGCTTACGACCAAGCTGCT 362
||||||||||| ||||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct 499 CTCTGGCTCGGGACATTCGAAACCGCCGAAAAAGCCGCCTTAGCTTACGACCAAGCTGCT 558
Query 363 TTTCAGCTCCGTGGAGATATCACGAAGCTCAACTTCCCAAACCTCAGACACGAAGACATT 422
||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 559 TTTCAGCTCCGTGGAGATATCGCGAAGCTTAACTTCCCAAACCTCATACACGAAGACATG 618
Query 423 AATCCTCTCCCTTCCTCTGTCGATGCAAAACTTCAAGCTATTTGCAAGAGTTTGAGAAAA 482
|||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||
Sbjct 619 AATCCTCTCCCTTCCTCTGTTGATACCAAGCTTCAAGCTATCTGCAAAAGTTTGAGAAAA 678
Query 483 ACAGAGGAGAAGTA-CTCTGTTTCAGGTAAAACA--G-AGCA-T--GTT--CT--GC--C 529
|||||||| || | ||||||||| | | ||||| | || | | ||| || | |
Sbjct 679 ACAGAGGA-AATTTGCTCTGTTTCTGATCAAACAAAGGAGTACTCTGTTTACTCTGTTTC 737
Query 530 A-A-AAA-CAGAGCTTTTCCTGCCAAAAACAGAGC-----------AA---------TT- 565
| | ||| |||||||||||||||||||| |||||| || ||
Sbjct 738 AGATAAAACAGAGCTTTTCCTGCCAAAAGCAGAGCTTTTCTTGCCTAAAAGAGAGCATTT 797
Query 566 GGAGACAAAGGAGTTCTTCGA-TGAGTCACCGAAAAGCGATGAGAACTCGT--------- 615
||||||||| ||| ||| | | ||||||||||| ||||||||||| |||||
Sbjct 798 GGAGACAAATGAGCTCT-CTAATGAGTCACCGAGAAGCGATGAGACCTCGTTGTTGGATG 856
Query 616 ---CGCAGGCGGGATATTCATCGTCGGATATAACATTGCTGGATTTCTCGGATTCAGAGT 672
||||||||| ||||||||||||||||| |||||| ||||||||||||||| | ||||
Sbjct 857 AGTCGCAGGCGGAATATTCATCGTCGGATAAAACATTCCTGGATTTCTCGGATACTGAGT 916
Query 673 TTGAAGAGATTGGGAGTTTCGGGCTT-GTGAAGTTTCCTTCGGTGGAGATTGATTGGGAT 731
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 917 TTGAAGAGATTGGAAGTTTCGGGCTTCG-GAAGTTTCCTTCGGTGGAGATTGATTGGGAT 975
Query 732 GCAATTAGCAAACTGG 747
|||||||| |||||||
Sbjct 976 GCAATTAGTAAACTGG 991
> AT3G52930.1 | Symbols: | Aldolase superfamily protein | chr3:19626748-19629073
REVERSE LENGTH=1911
Length=1911
Score = 313 bits (169), Expect = 3e-84
Identities = 189/199 (95%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 770 GCCAAGGTCATTGTCTTTCTTGTTCCGACGTGCGTTGCAGCAGAGTACCTTGAAGACATG 829
|||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1063 GCCATGGTCATTGTCTTTCTCATTCGGACGTGCGTTGCAGCAGTCTACCTTGAAGACATG 1122
Query 830 GGCAGGCATAGAGGAGAATGTGAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGC 889
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GGCAGGTAAAGAGGAGAATGTCAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGC 1182
Query 890 CAACTCTGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGC 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TAACTCTGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGC 1242
Query 950 TGAGAGCCTTCACGTGAAG 968
|||||||||||||||||||
Sbjct 1243 TGAGAGCCTTCACGTGAAG 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5