BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932189
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22260.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase ... 1358 0.0
AT2G22270.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 65.8 8e-10
> AT2G22260.1 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase
family protein | chr2:9461125-9463192 FORWARD LENGTH=1146
Length=1146
Score = 1358 bits (735), Expect = 0.0
Identities = 883/953 (93%), Gaps = 15/953 (2%)
Strand=Plus/Plus
Query 24 AATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAATCAGCGACGGTCAA 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAATCAGCGACGGTCAA 137
Query 84 ATCACCAATGACGAAGCTGAATCGCTTCA-TAAGAAGAACAACTGTTCTGGGTACGAGCT 142
||||||||||| ||||||||||| | | | ||| ||||| |||||||| ||| || ||||
Sbjct 138 ATCACCAATGAGGAAGCTGAATCAC-TAATTAACAAGAAGAACTGTTCAGGGCACAAGCT 196
Query 143 AAGAGAAGTAACTGGTAGTGACACATTCTCTGACAA---T---G--G-TTCACTTAACAA 193
|| ||||||||||| ||||||||||||||||||||| | | | |||| || |||
Sbjct 197 AAAAGAAGTAACTGATAGTGACACATTCTCTGACAATGGTAAAGATGATTCAGATACCAA 256
Query 194 GAAAAGACTCCATTATCATCAGGATCAGCGGAGGATGAGTTTGACATCGATTGTGGCGGT 253
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GAAAAGATTCCATTACCATCAGGATCAGCGGAGGATGAGTTTGACATCGATTGTGGCGGT 316
Query 254 GGAGACTCCTTCATCTACCGACGCTCCCACTAGAAGAACCATTGATCTTGGCCATGGAAG 313
|||| |||||||||| | | |||||||| |||||| ||||||||||||||||||||||||
Sbjct 317 GGAGTCTCCTTCATCGAGCAACGCTCCCTCTAGAAAAACCATTGATCTTGGCCATGGAAG 376
Query 314 CGACCTCATCTACATTCAGAGGTTTCTTCCCTTTCAACAATCTTGGTCTTTCTTTGATTA 373
||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 377 CGACCTCATTTACATTCAGAGGTTTCTTCCATTTCAACAATCTTGGACTTTCTTCGATTA 436
Query 374 TCTCGACAAGCATATTCCTTGGACCAGGCCTACTATTCGTGTCTTCGGTCGATCTTGCCT 433
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 TCTCGACAAGCATATTCCTTGGACCAGGCCTACTATTCGTGTCTTTGGTCGATCTTGCCT 496
Query 434 TCAGCCGAGAGATACTTGTTATGTTGCGAGTAGCGGATTGACTTCACTGGTGTACAGTGG 493
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 497 CCAGCCGAGAGATACTTGTTATGTTGCAAGTAGCGGATTGACTGCGTTGGTGTACAGTGG 556
Query 494 ATATCGACCTAA-TGCTTATTCGTGGGATGATTTTCCACCTCTCAAGGAGATTCTGGATG 552
||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 557 ATATCGACCTACCTCCT-ATTCGTGGGATGATTTCCCACCTCTCAAGGAGATTCTGGATG 615
Query 553 CTATTTACAAAGCGCTTCCTGGAAGCAGATTCAACAGCTTGCTGTTAAATAGGTACAAAG 612
|||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 616 CTATTTACAAGGTGCTTCCTGGAAGCAGATTCAACAGCTTGCTCTTAAATAGATACAAAG 675
Query 613 GTGCCAGTGACTATGTGGCTTGGCATGCAGATGATGAAAAGATTTATGGTCCAACTCCCG 672
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 676 GTGCCAGTGATTATGTGGCTTGGCATGCAGATGATGAAAAGATTTATGGTCCAACTCCAG 735
Query 673 AAATTGCTTCAGTCTCGTTTGGATGCGAACGTGATTTTGTGTTGAAGAAAAAGAAACATG 732
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 736 AAATTGCTTCAGTCTCGTTTGGATGTGAACGTGATTTTGTGTTGAAGAAAAAGAAAGATG 795
Query 733 AAGAATCTTCCCAAGAGAAAACAGGGGACGGTGGACCAGCGAAAAAGAGGTTAAAGAGAA 792
||||||||||||||| ||||||||| ||| |||||||||| || ||||||||||||||||
Sbjct 796 AAGAATCTTCCCAAGGGAAAACAGGAGACAGTGGACCAGCTAAGAAGAGGTTAAAGAGAA 855
Query 793 GCAGCAGAGAGGATCAACAAAGTTTGACATTGAAGCATGGATCGTTGCTGGTGATGAGAG 852
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 856 GCAGCAGAGAGGATCAACAAAGTTTGACATTGAAACATGGATCGTTGCTGGTGATGAGAG 915
Query 853 GATACACTCAAAGGGACTGGATTCATTCTGTGCCAAAGCGGGCAAAGGCAGAAGGCACTC 912
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 916 GATACACTCAAAGAGACTGGATTCATTCTGTGCCAAAGCGTGCAAAGGCAGAGGGCACTC 975
Query 913 GTATCAACCTCACCTTCAGGCGTGTTTTGTAAACTGAGAATCATA-GACAAGA 964
||||||||||||| ||||||| ||||||||||| |||| |||||| | |||||
Sbjct 976 GTATCAACCTCACATTCAGGCTTGTTTTGTAAATTGAGCATCATATG-CAAGA 1027
> AT2G22270.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G39860.2);
Has 247 Blast hits to 231 proteins in 42 species: Archae -
0; Bacteria - 17; Metazoa - 14; Fungi - 5; Plants - 145; Viruses
- 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr2:9463694-9465467
FORWARD LENGTH=1243
Length=1243
Score = 65.8 bits (35), Expect = 8e-10
Identities = 43/46 (93%), Gaps = 3/46 (7%)
Strand=Plus/Plus
Query 25 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAAT 70
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 148 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCT---GATGGAAT 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47169864033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5