BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932197

Length=838
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22360.1 | Symbols:  | DNAJ heat shock family protein | chr2...   361    7e-99


> AT2G22360.1 | Symbols:  | DNAJ heat shock family protein | chr2:9497595-9500615 
FORWARD LENGTH=1615
Length=1615

 Score =  361 bits (195),  Expect = 7e-99
 Identities = 385/472 (82%), Gaps = 32/472 (7%)
 Strand=Plus/Plus

Query  4    AGTGTATTCAGCTAAATATGTCTCTAATACAATTTGGAAGTACTTGCATTGCTCAATGGA  63
            |||||||| ||||||||||| || |||||||| |||||||||| ||  ||||||||||||
Sbjct  114  AGTGTATTGAGCTAAATATGGCTATAATACAACTTGGAAGTACATGTGTTGCTCAATGGA  173

Query  64   GTA------CT--A-TT-C-GTC----CTCCATT-T-GCACCAG--T-GAGATCAAGTCG  103
            |||      ||  | || | |||    ||  ||| |  || |||  | || ||||| |||
Sbjct  174  GTATTCGTCCTCAATTTGCAGTCAGAGCT-TATTATCCCAGCAGAATCGA-ATCAACTCG  231

Query  104  CCAACTAAATTCCATG-ATCCAAATAAACTGTTTGGGTGCTTCAAAGTCGAGTATGTTCT  162
            ||| | |||||||| | | |||| |||| |||||||| ||||||||||||||||||||||
Sbjct  232  CCATCAAAATTCCA-GTAGCCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCT  290

Query  163  CACATGGATCCTTGCCTTTCTTGTCAATGCCGGGAGTGTTAAGAAATAGGCG-CAAT--T  219
            ||||||| || ||||| |||||||| ||| ||||| |||  ||||||| ||  |  |  |
Sbjct  291  CACATGGGTCATTGCCCTTCTTGTCCATGACGGGAATGTCCAGAAATATGCATCC-TCCT  349

Query  220  -GTAGAGGATCTCGCTTCATTGTTAAAGCTGATGCAGTTTACTATTTAGTCCTCGGAGTT  278
             | |||||||||||||||| ||||| ||||||||||| ||||||||  || |||||||||
Sbjct  350  CGCAGAGGATCTCGCTTCACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTT  409

Query  279  TCGAAAAACGCAACCTTATCTGAGATTAAAACCGCTTATCGGAAACTGGCTTTGAGTTAC  338
            |||||||| ||||||  | |||||||||||| |||||||||||| ||||||  || ||||
Sbjct  410  TCGAAAAATGCAACCAAAGCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTAC  469

Query  339  CATCCGGATGTGAACAAGAATCCTGATGCAGAAGAGAGATTCATAGAAATAAGTAATGCA  398
            |||||||||||||||||| ||||||  |||||||||| ||||| |||||||||||| |||
Sbjct  470  CATCCGGATGTGAACAAGGATCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCA  529

Query  399  TATGAGGTCTTATCAGAAGA-GAT--GAAATCTCATTACGATAAGTATGGTG  447
            |||||||| |||||||| || ||   |||||||| |||||||| ||||||||
Sbjct  530  TATGAGGTTTTATCAGATGATGAAAAGAAATCTCTTTACGATAGGTATGGTG  581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40840361511


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5