BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932206
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22450.1 | Symbols: | riboflavin biosynthesis protein, puta... 2407 0.0
AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohyd... 377 1e-103
> AT2G22450.1 | Symbols: | riboflavin biosynthesis protein, putative
| chr2:9530547-9532914 FORWARD LENGTH=1761
Length=1761
Score = 2407 bits (1303), Expect = 0.0
Identities = 1412/1464 (96%), Gaps = 9/1464 (1%)
Strand=Plus/Plus
Query 2 TCTT-AAAACTCCGGTGAAAATGGCGTCTCTTACTCTCCGGTGCGACTCGACGCATCTTT 60
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 88 TCTTCAAAACTCCGGTGAAAATGGCGTCGCTTACTCTCCGGTGCGATTCGACGCATCTTT 147
Query 61 TTCCTTCGCGTGATGTTGTCAAGGGAACAAAACCATTTAGAACGAGCTTGGTGTGTACTA 120
| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 148 TGCCTTCCCGTGATGTTGTCAAGGGAACAAAACCATTTGGAACGAGCTTGGTGTATCCTA 207
Query 121 GGATTATATCGAAGAGGTTTAATGTTAGAATGAGAGTGATATCTGAGGAAGGAGATGTGT 180
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 208 GGATCATATCGAAGAAGTTTAATGTTAGAATGAGAGTGATACCTGAGGAAGGAGATGTGT 267
Query 181 TCTCTTCCTCTAAGAGTAATGGATCATCAATGGGGATTGAGTTGCAACCGGATTTGGTAT 240
||||||| ||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 268 TCTCTTCTTCTAAGAGTAATGGATCATCAATGGGGATTGAGTTACAGCCAGATTTGGTTT 327
Query 241 CGTTTGGAACATTAGCAGCTGAAATGATTCCCACAACAATGGATTCTTCTGATGTTGAGG 300
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 328 CGTTTGGAACATTAGCAGCTGAAATGATTCCTACAACAATGGATTCTCCTGAAGTTGAGG 387
Query 301 ATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTTGCGTCTATTCCTCAAGCTATTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 ATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTTGCGTCTATTCCTCAAGCTATTG 447
Query 361 AGGATATTCGAC-TGGGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAAACGAA 419
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AAGATATTCGACAT-GGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAAACGAA 506
Query 420 GGAGATTTGATAATGGCTGCATCGTTGG-TAACACCTGAAGCTATGGCTTTTGTTGTAAA 478
||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||
Sbjct 507 GGAGATTTGATAATGGCGGCATCTTTGGCT-ACACCTGAAGCTATGGCTTTTGTTGTAAA 565
Query 479 GCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGACTTGGAGAGGTTAGAGCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGACTTGGAGAGGTTAGAGCT 625
Query 539 TCCTTTAATGGTGACGCGAAAGGGTAACGAGGAAAAACTCCACACGGCCTTCACGGTTTC 598
|||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 626 TCCTTTAATGGTAACGCGTAAGGATAACGAGGAAAAACTCCGCACGGCCTTCACGGTTTC 685
Query 599 AGTGGACGCGAAAAAGGGAACATCCACAGGTGTCTCAGCTCGTGATAGGGCGCAAACAAT 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AGTGGACGCAAAAAAGGGAACATCCACAGGTGTCTCAGCTCGTGATAGGGCGCAAACAAT 745
Query 659 ATTAACCCTTGCATCAAAAGATTCAAAACCTCAAGATTTCAATCGTCCTGGTCATATTTT 718
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 746 ATTAACCCTTGCATCAAAAGATTCAAAACCTGAAGATTTCAATCGTCCTGGTCATATTTT 805
Query 719 TCCTTTGAGATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCATACAGAAGCCTCTGT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TCCTTTGAGATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCATACAGAAGCCTCTGT 865
Query 779 TGACTTGACTGTGTTGGCCGGTTTAGAACCAGTATCGGTTTTATGTGAGATTGTAGATGA 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 866 TGACTTGACTGTGTTGGCCGGTTTAGAACCAGTATCTGTTTTATGTGAGATTGTAGATGA 925
Query 839 TGATGGTTCCATGGCTAGATTACCAAGACTTCGCCAATTCGCTAAAGAGAACGACTTGAA 898
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 926 TGATGGTTCCATGGCTAGATTACCAAGACTCCGCCAATTCGCTCAAGAGAACAACTTGAA 985
Query 899 AATAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAAAGAGAGAGACTGGTTGAGTT 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATTAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAAAGAGAGAGACTGGTTGAGTT 1045
Query 959 TACTGCGGTTGCGCCTATACCGACAATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 TACTGCGGTTGCGCCTATACCGACAATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC 1105
Query 1019 ATTACTTGATGGAGTTGAGCACATTGCAATGGTCAAGGGGGAAATCGGAGATGGGAAGGA 1078
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1106 ATTACTTGATGGAGTTGAGCACATTGCAATGGTCAAGGGAGAAATCGGAGATGGGAAGGA 1165
Query 1079 TATTCTCGTGAGAGTACACGCAGAGTGTATCACGGATGATATATTCGGAAATAGCTCGGG 1138
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1166 TATTCTCGTGAGAGTACACGCGGAGTGTATCACAGATGATATATTCGGAAATAGCTCTGG 1225
Query 1139 TGGAAAACAGTTAGCGATTGCAATGAGACTGATTGAAGAAACTGGGAGAGGTGTTTTTGT 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1226 TGGAAAACAGTTAGCGATTGCAATGAGACTGATTGAAGAAAATGGGAGAGGTGTTTTTGT 1285
Query 1199 CTACTTACGTGGTCCTGAAAGTAAAGGCATTGACCTAAGCCATAAGCCTCGTACTTACAA 1258
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1286 CTACTTACGTGGTCCTGAAAGTAAAGGCATTGATCTAAGCCACAAGCCTCGTACTTACAA 1345
Query 1259 CACCAATTCAGATCAAGCCGAAGGTGTTTCATTTCCCGTTGCTTCACGGGAATACGGCAT 1318
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1346 CACCAATTCAGATCAAGCCGAGGGTGTTTCATTTCCCGTTGCTTCACGGGAATACGGCAT 1405
Query 1319 TGGAGCACAAATTCTGAGGGATCTTGGAGTTAGAGAGATGAAAGTGATGACGAATAATCC 1378
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1406 TGGAGCACAAATTCTAAGGGATCTTGGAGTTAGAGAGATGAAGGTGATGACGAATAATCC 1465
Query 1379 AGCACATTACGTTGGTCTTAAAGGCTATGGTTTATCAATTTCTGGTAAGGTTCCACTCAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 AGCACATTACGTTGGTCTTAAAGGCTATGGTTTATCAATTTCTGGTAAGGTTCCACTCAT 1525
Query 1439 TAGT-C-C-TTAAGTGTTGGTTTT 1459
|| | | | |||||||||| ||||
Sbjct 1526 TACTACTCCTTAAGTGTTG-TTTT 1548
> AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydrolase
II | chr5:25718404-25721162 FORWARD LENGTH=2059
Length=2059
Score = 377 bits (204), Expect = 1e-103
Identities = 620/817 (76%), Gaps = 44/817 (5%)
Strand=Plus/Plus
Query 296 TGAGGATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTT-GCGTCTATTCCTCAAG 354
||| ||||| || ||||| || ||| ||| ||| ||| ||| | ||||| ||| | |
Sbjct 397 TGAAGATGATGACTTTGAGTTGGATTTACCAACTCCTGG-TTTCTCTTCTATCCCTGAGG 455
Query 355 CTATTGAGGATATTCGACTGGGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAA 414
| ||||| ||||| || | || ||| | || || ||||| |||||||||||||| ||||
Sbjct 456 CCATTGAAGATATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGATGAAGATAGGGAAA 515
Query 415 ACGAAGGAGATTTGATAATGGCTGCATC-GTTGGTAACACCTGAAGCTATGGCTTTTGTT 473
| ||||| |||||| | |||||||| || ||| | |||||||||||||||||||||| ||
Sbjct 516 ATGAAGGGGATTTGGTGATGGCTGC-TCAGTTAGCAACACCTGAAGCTATGGCTTTTATT 574
Query 474 GTAAAG-CATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGACT-TGGAGAGGT 531
|| || ||||| ||||| || || |||||||||||||||| || || | | |||||||
Sbjct 575 GT-GAGACATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATGA-TCTCGAGAGGT 632
Query 532 TAG-AGCTTCCTTTAATGGTGACGCGA-AAGGGTAACGAGGAAAAACTCCAC-ACGGCCT 588
| | | |||||| ||||||||| | | |||| ||||| ||||| || | | || || |
Sbjct 633 T-GCACCTTCCTCTAATGGTGAATC-AGAAGGAAAACGAAGAAAAGCT-CTCTACTGCAT 689
Query 589 TCACGGTTTCAGTGGACGCGAAAA-AGGGAACATCCACAGGTGTCTCAGCTCGTGATAGG 647
| || || | ||||| || |||| | || ||| | || || || ||||||||||| |||
Sbjct 690 TTACAGTGACTGTGGATGC-AAAACATGGTACAACAACGGGAGTATCAGCTCGTGACAGG 748
Query 648 GCGCA-AACAATATTAACCCTTGCATCAAAAGATTCAAAACCTCAAGATTTCAATCGTCC 706
|| | ||| ||||| | |||||||||| ||||||||| ||| | ||||||||||||||
Sbjct 749 GC-AACAACCATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGGATTTCAATCGTCC 807
Query 707 TGGTCATATTTTTCCTTTG-AGATA-CAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCAT 764
|||||||| || || || || || | | |||||||| ||||| ||||| || || ||
Sbjct 808 AGGTCATATCTTCCCACTGAAG-TATC-GGGAAGGTGGGGTTCTGAAAAGGGCTGGACAC 865
Query 765 ACAGAAGCCTCTGTTGACT-TGACTGTGTTGGCCGGTTTAGAACCAGTATCG-GT-TTTA 821
|| ||||| |||||||| | | ||||| || || || | || || || | | || ||
Sbjct 866 ACTGAAGCATCTGTTGA-TCTCACTGTTTTAGCTGGACTGGATCCTGT-TGGAGTACTT- 922
Query 822 TGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCAAGACTTCGCCAATTCGCT 881
||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 923 TGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACTTCGTGAATTTGCC 982
Query 882 AAAGAGAACGACTTGAAAATAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAA-AG 940
|||||| || ||||| | |||| ||||| ||||| ||||| || |||| ||| ||
Sbjct 983 GCCGAGAACAACCTGAAAGTTGTTTCCATCGCAGATTTGATCAGGTATAGAAG-AAAGAG 1041
Query 941 AGAGAGACTGGTTGA--GT--TTACTGCGGTTGCGCCTATACCGACAATGTGGGGACCAT 996
||| | | | || || || || |||||| | || || || |||||||||||||| |
Sbjct 1042 AGATAAATTAGTGGAACGTGCTT-CTGCGGCT-CGG--ATCCCAACAATGTGGGGACCTT 1097
Query 997 TCAAAGCACATTGCTTTAAGTC-ATTACTT-GATGGAGTTGAGCACATTGCAATGGTCAA 1054
||| || | |||| || ||| || | || || ||| | |||||||| |||||||| ||
Sbjct 1098 TCACTGCTTACTGCTATAGGTCCAT-A-TTAGACGGAATAGAGCACATAGCAATGGTTAA 1155
Query 1055 GGGGGAAATCGGAGATGGG-AAGGATATTCTCGTGAG 1090
||| || || || || || ||| | |||||||||||
Sbjct 1156 GGGTGAGATTGGTGACGGTCAAG-ACATTCTCGTGAG 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5