BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932212

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24090.1 | Symbols:  | Ribosomal protein L35 | chr2:10241964...   150    4e-36


> AT2G24090.1 | Symbols:  | Ribosomal protein L35 | chr2:10241964-10243614 
FORWARD LENGTH=710
Length=710

 Score =  150 bits (81),  Expect = 4e-36
 Identities = 88/91 (97%), Gaps = 1/91 (1%)
 Strand=Plus/Minus

Query  1    TTGTTCTTCTTAGCTAACAAATGCTGCTTTCCGGATCTCCTCCTCACAATCTTCCC-CTA  59
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  406  TTGTTCTTCTTAGCTAACAAATGCTGCTTTCCAGATCTCCTCCTCACAATCTTCCCTCTA  347

Query  60   CCCGTCACCCTGAACCGCTTCGCTGAGGCCT  90
            |||||||| ||||||||||||||||||||||
Sbjct  346  CCCGTCACTCTGAACCGCTTCGCTGAGGCCT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9003941829


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5