BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932214

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22510.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   686    0.0  


> AT2G22510.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr2:9569026-9569758 REVERSE LENGTH=733
Length=733

 Score =  686 bits (371),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 1/414 (0%)
 Strand=Plus/Plus

Query  1    CTCAAAACCCTAATCTCCAAAAATGGCTCAGTGGTTATCATCCCTTGTCATCGCATTAAC  60
            |||||| |||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct  37   CTCAAACCCCTAATC-CCCAAAATGGCTCACTGGTTGTCATCCCTAGTCATTGCATTAAC  95

Query  61   ATTCACAAGCTTTTTCACTAGTCTCTCAGCTAGTCGCCACCTTCTTCAATCAACACCAGC  120
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  96   ATTCACAAGCTTTTTCACTGGTCTCTCAGCTAGTCGCCACCTTCTTCAATCAACACCAGC  155

Query  121  TATTACCCCACCGGTTACAACAACATTTCCACCACTTCCCACAACCACAATGCCACCATT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  156  TATTACCCCACCGGTTACAACAACATTTCCACCACTTCCCACAACCACAATGCCACCATT  215

Query  181  TCCTCCTTCAACTTCTCTTCCTCAGCCAACTGCGTTTCCGCCATTACCGAGCTCACAAAT  240
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  216  TCCTCCTTCAACTTCTCTTCCTCAGCCAACTGCGTTTCCGCCATTACCAAGCTCACAAAT  275

Query  241  ACCTTCTTTGCCTAACCCAGCACAACCCATTAATATCCCAAACTTCCCACAAATCAATAT  300
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  276  ACCTTCTTTACCTAACCCAGCACAACCCATTAATATCCCAAACTTCCCACAAATCAATAT  335

Query  301  CCCTAACTTCCCAATTTCTATCCCAAACAACTTCCCATTCAATCTTCCCACCAGCATACC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  336  CCCTAACTTCCCAATTTCTATCCCAAACAACTTCCCATTCAATCTTCCCACCAGCATTCC  395

Query  361  AACCATCCCATTCTTCACTCCACCACCTTCCAAATGAGAAGCGAAATAAGCTCT  414
            ||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  396  AACAATCCCATTCTTCACTCCACCACCTTCCAAATGAGAAGCTAATTAAGCTCT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5