BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932218
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02590.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 200 6e-51
> AT2G02590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Putative
small multi-drug export (InterPro:IPR009577); Has 405 Blast
hits to 405 proteins in 185 species: Archae - 65; Bacteria
- 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 22 (source: NCBI BLink). | chr2:704918-706669
FORWARD LENGTH=1209
Length=1209
Score = 200 bits (108), Expect = 6e-51
Identities = 135/148 (91%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 3 AAACAGCAGACC-GAACGTCATGTCGAAGATCGATGCTATTATAGCGCCTGTCCAAGCAC 61
|||||||||||| |||| |||||||| ||| |||||||||||||| |||||||||||||
Sbjct 867 AAACAGCAGACCAAAACGGCATGTCGAGGATTGATGCTATTATAGCTCCTGTCCAAGCAC 808
Query 62 CAGTTCAAGGGAATGGAACAGCTATAACGAGCATTAGCCCTAGCCATTGGAACTCTTCCA 121
| |||| ||||||||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct 807 CGGTTCCAGGGAATGGAACAGCTACAAAGAGCATTAGCCCTAACCATTTGAACTCTTCCA 748
Query 122 CAGGTCCAGCTTTCTCTTTAGCACTTTT 149
|||||||||||||||||||||| |||||
Sbjct 747 CAGGTCCAGCTTTCTCTTTAGCTCTTTT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5