BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932220
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22570.1 | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9... 1229 0.0
> AT2G22570.1 | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9589435-9590879
REVERSE LENGTH=937
Length=937
Score = 1229 bits (665), Expect = 0.0
Identities = 734/768 (96%), Gaps = 2/768 (0%)
Strand=Plus/Plus
Query 12 CTCGTATCGATATGGCGAATCATGAAACGATATTCGATCATCTAAAGAAGCAGATACCAG 71
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 23 CTCGTATCGATATGGCGAATCATGAAACGATATTTGATCAGCTAAAGAAGCAGATTCCAG 82
Query 72 TGGATGAAGAAGAATCTCTCAATTTGAATCGAGACTCGAGCGTTGGTCTCGTCATCGTTG 131
| ||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 83 TAGATGAGGAAGAACCTCTGATTTTGAATCGAGACTCAAGCGTTGGTCTCGTCATCGTTG 142
Query 132 ACGTTGTTAATGGCTTCTGCACAATTGGCTCCGGCAATATGGCTCCTACAAAGCATAATG 191
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 143 ACGTTGTTAATGGCTTCTGCACAATTGGCTCCGGCAATATGGCTCCAACAAAGCATAATG 202
Query 192 AACAAATATCGAAAATGGTGGAGGAAAGTGCAAAGCTTGCTAGAGAATTCTGTGATCGGG 251
|||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 203 AACAGATATCGAAGATGGTGGAGGAAAGTGCAAAGCTTGCTAGAGAGTTCTGTGATCGGA 262
Query 252 AATGGCCGGTTTTGGCCTTTATTGACTCTCATCATCCGGATATTCCTGAGATACCTTATC 311
|||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 263 AATGGCCGGTTTTGGCGTTTATTGACTCTCATCATCCAGATATTCCGGAGAGACCTTATC 322
Query 312 CTCCTCATTGTATTATAGGAACTGAAGAATCAGAACTTGTTCCTGCTCTGAAATGGCTTG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTCCTCATTGTATTATAGGAACTGAAGAATCAGAACTTGTTCCTGCTCTGAAATGGCTTG 382
Query 372 AAAGTGAGAACTGTGCCACTCTTAGACGAAAGGATTGTATTGATGGGTTTGTGGGTTCGA 431
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 383 AAAGTGAGGATTGTGCCACTCTTAGACGAAAGGATTGTATTAATGGGTTTGTGGGTTCGA 442
Query 432 TGGAGAAAGATGGTTCTAATGTTTTTGTGGATTGGGTTAAGGAAAAACAGATCAAAGTTA 491
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TGGAGAGTGATGGTTCTAATGTTTTTGTGGATTGGGTTAAGGAAAAACAGATCAAAGTTA 502
Query 492 TTGTGGTTGTAGGTATCTGTACAGACATATGTGTGTTTGATTTTGTGGCTACTGCACTGT 551
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 503 TTGTCGTTGTAGGTATCTGTACAGACATATGTGTGTTTGATTTTGTGGCTACTGCACTTT 562
Query 552 CTGCCCGAAACCACGGTGTTCTTTCTCCTCTAGAAGACGTGGTAGTTTACTCGCGTGGCT 611
||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||
Sbjct 563 CTGCCCGAAACCACGGTGTTCTTTCTCCTGTAGAAGATGTGGTAGTGTACTCCCGTGGCT 622
Query 612 GCGCTACTTTTGACCTTCCTCTTCATGTTGCGAAAGATATCAAAGGCGCTCAGGCTCATC 671
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 623 GTGCTACTTTTGACCTTCCTCTTCATGTTGCGAAAGACATCAAAGGCGCTCAGGCTCATC 682
Query 672 CTCAGGAGTTGATGCACCATGTAGGTCTATATATGGCTAAAGGAAGAGGAGCTAAGGTAG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 CTCAGGAGTTGATGCACCATGTAGGTCTATATATGGCTAAAGGAAGAGGAGCTCAGGTAG 742
Query 732 TCTCTAAAATTTCTTTTGAGACTTGAAAGACTAT--CTCGTTTATAAA 777
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 743 TCTCTAAAATTTCTTTTGAGACTTGAAAGACTATATCTCGTTTATAAA 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5