BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932229
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein... 1400 0.0
AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional re... 71.3 2e-11
> AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein
8 | chr2:9636380-9638745 FORWARD LENGTH=1630
Length=1630
Score = 1400 bits (758), Expect = 0.0
Identities = 926/1002 (92%), Gaps = 32/1002 (3%)
Strand=Plus/Plus
Query 10 ATT-AAGATCTGATGTCTTATCGATTGCTACGTGTGGATAA-G--G-A--GG--A----A 56
||| |||||||||||||||||||||||||| |||||||||| | | | || | |
Sbjct 367 ATTGAAGATCTGATGTCTTATCGATTGCTAAGTGTGGATAAGGATGAACTGGTTACGTCA 426
Query 57 CCTGGTTTGAAGGAACGTAACTACTTGGGTCTGTCTGATTGTTCCTCTGTTGATAGCTCA 116
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 427 CCTTGTTTGAAAGAACGTAACTACTTGGGTCTCTCTGATTGTTCCTCTGTTGATAGCTCA 486
Query 117 ACCATTCCCAATGTTGAT---AAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 173
|| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACTATTCCCAATGTTGTTGGGAAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 546
Query 174 GGTCTTCCTGAGTCGCAATCTCCCGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 233
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 547 GGTCTTCCTGAGTCTCAATCTCCTGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 606
Query 234 ACACTCGATGAGAAACTTCTCTTTCCGTTGCTTCCTTGTAAAGACAATGCTTCTGCTACT 293
|||| ||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||
Sbjct 607 ACACCCGATGAGAAGCTTCTCTTCCCGTTGCTACCTTCTAAAGACAATGGTTCTGCTACT 666
Query 294 ACAGGGCACAAGAATGTTGTTTCTGGTAACAAAAGAGGATTTGCTGATACTTGGGACGAG 353
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 667 ACAGGGCATAAGAATGTTGTTTCTGGTAACAAGAGAGGATTTGCTGACACTTGGGATGAG 726
Query 354 TTTTCGGGTGTGAAAGGATCTGTTAGACCT---GGAGGAATCAACATGATGTTGTCGCCG 410
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 TTTTCGGGTGTGAAAGGATCTGTTAGACCTGGAGGAGGAATCAACATGATGTTGTCGCCG 786
Query 411 AAAGTTAAGGATGTCCCGAA-AG-A-T------GAAAGATCTCATGCTAAGGGTGGTGGC 461
||||||||||||||| |||| || | | ||||||||||||||||| | ||||||
Sbjct 787 AAAGTTAAGGATGTCTCGAAGAGTATTCAAGAAGAAAGATCTCATGCTAA--G-GGTGGC 843
Query 462 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 903
Query 522 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGTAAACCG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 904 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGGAAACCT 963
Query 582 GGTCTTGGTGCCCTGTTTGTGAAAGTGAGCATGGATGGTGCTCCATATCTGAGAAAGGTC 641
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 964 GGTCTTGGTGTTCTGTTTGTGAAGGTGAGCATGGATGGTGCTCCGTATCTGAGAAAGGTC 1023
Query 642 GACTTGAGAACTTACAGTTCCTATCAACAGTTGTCTTCTGCGCTTGAGAAAATGTTCAGC 701
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1024 GACTTGAGAACTTACACTTCCTATCAACAGTTGTCTTCTGCACTTGAGAAAATGTTCAGC 1083
Query 702 TGCTTCACTCTTGGTCAATATGGACTTCATGGAGCTCAAGGGACGGAAAGAATGAGCGAG 761
|||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||||||||
Sbjct 1084 TGCTTCACCCTTGGTCAATGTGGTCTTCATGGTGCTCAAGGGAGGGAAAGAATGAGCGAG 1143
Query 762 ATTAAATTGAAGGATCTTCTTCATGGATCAGAATTCGTGCTTACTTATGAAGACAAAGAC 821
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1144 ATTAAACTGAAGGATCTTCTTCATGGATCAGAATTTGTGCTTACTTATGAAGATAAAGAC 1203
Query 822 GGTGATTGGATGCTCGTTGGAGATGTCCCTTGGGAGATATTTACTGAAACATGCCAGAAA 881
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1204 GGTGATTGGATGCTTGTTGGCGATGTTCCATGGGAGATATTTACTGAAACATGCCAGAAA 1263
Query 882 CTGAAGATCATGAAGGGCTCTGATTCTATTGGATTAGCTCCAGGTGCAGTGGAGAAATCG 941
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1264 CTGAAGATCATGAAGGGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCG 1323
Query 942 AAGAACAAAGAGCGGGTTTGAAATAAA-AGGCTCAAGACAAA 982
||||||||||||||||||||||| || | ||||||||||||
Sbjct 1324 AAGAACAAAGAGCGGGTTTGAAACGAAGATGCTCAAGACAAA 1365
> AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional
regulator family protein | chr1:1136258-1138613 FORWARD LENGTH=1087
Length=1087
Score = 71.3 bits (38), Expect = 2e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 805 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTTGGAGATGTCCCTTGG 854
|||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 663 CTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGG 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5