BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932232
Length=403
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22720.2 | Symbols: | SPT2 chromatin protein | chr2:9657344... 296 1e-79
> AT2G22720.2 | Symbols: | SPT2 chromatin protein | chr2:9657344-9660776
FORWARD LENGTH=2263
Length=2263
Score = 296 bits (160), Expect = 1e-79
Identities = 215/239 (90%), Gaps = 14/239 (6%)
Strand=Plus/Plus
Query 21 ATGCAAGTGAGAA-TGTTTGAGAGGCGCAACAAC---ATGGCGCATAATAGCAAAAGACC 76
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGCAAGTGAGAACT-TTTGAGAGGCGCAACAACAAGATGGCGCATAATAGCAAAAGACC 59
Query 77 TAATTTTGCTTCAGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCACAAAACCT 136
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TAATTTTGCTTCTGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCTCAAAACCT 119
Query 137 A-AATCCAAACCAGAGTACCCctctcctcttcttctatatccctttttatctcttcgcag 195
| | || ||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 AGGAGCCCAACGAGAGCACCCCTTTCCTCTTCTTCTATATCCCTTTTTATCTCTTCGCAG 179
Query 196 ctttctctcttctctcagatctata-tgct-ttctcttcgtttc-caatcgttcgcttt 251
||||||||| ||||||||||||||| | || ||||| | || | |||||||||| |||
Sbjct 180 CTTTCTCTCCTCTCTCAGATCTATACT-CTCTTCTC--C-TT-CACAATCGTTCGTTTT 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19051476871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5