BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932241
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1308 0.0
> AT2G22790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G67020.1);
Has 111 Blast hits to 111 proteins in 33 species: Archae -
0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9695932-9696909
FORWARD LENGTH=978
Length=978
Score = 1308 bits (708), Expect = 0.0
Identities = 897/985 (91%), Gaps = 26/985 (3%)
Strand=Plus/Plus
Query 21 ATGAATCATCGTCTCGCCGGAATAATTAGCCCACTTGGCCACATTACTACAGATCCAATT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATCATCGTCTCGCCGGAATAATTAGCCCACTTGGCCACATTACTACAGATCCAATT 60
Query 81 CGCTCCTCCTCCGTTAAGCCACCGTCTCCGGTTTACTACAAAACCATAATTAACCATTTG 140
|| ||||||||||| || || ||||||||||||||||||||||||| ||||||||||
Sbjct 61 CGTTCCTCCTCCGTGAACCCTTCGTCTCCGGTTTACTACAAAACCATTGTTAACCATTTC 120
Query 141 AAATCTCAAACCGGTATCCACGTTTCACCTGGGCTTACCAATCAAGAGATCTCAGCCGTT 200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCTCAAACCGGTAACCACGTTTCACCTGGGCTTACCAATCAAGAGATCTCAGCCGTT 180
Query 201 GAATCCTCTCTTGGTTTCTCTTTCCCTCTTGATCTCCGTTCGATTCTTCAAACCGGTCTT 260
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GAATCCTCTCATGGTTTCTCTTTCCCTCTTGATCTCCGTTCGATTCTCCAAACCGGTCTT 240
Query 261 CCGGTTAGTACCAATTTTCCCAATTGGCGAACCGGGTCGAACCGGAATCATCTCCTTCTC 320
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 CCGGTTGGTACCAATTTTCCCAATTGGCGAACCGGGTCGAACCGGAATAATCTTCTTCTC 300
Query 321 CCTCTTCTTAATCTGTCTCAA-ATCGTCGTCAGAAACGGATTCTGGGTCGATTCTTGGGG 379
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 301 CCTCTTCTTAATCTGTCTCAACA-CGTCGTCAGAAATGGATTCTGGGTCGATTCTTGGGG 359
Query 380 GATCCGACCCGGAAACGACTCGGAGGCTTTATTGCTCGTGAAGAAATTGATCGAGATCGC 439
||||||||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||
Sbjct 360 GATCCGACCCGGAAATGACGCGGAGGCTTTGTCACTCGTGAAGAAATTGATTGAGATCGC 419
Query 440 TCCGGTTCTCGTCCCCGTGTTCGGCGATTTCTACGTCCCTTCGACGACGCCAAATTTGGC 499
|||||| |||||||| || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TCCGGTACTCGTCCCTGTATACGGCGATTTTTACGTCCCTTCGACGACGCCAAATTTGGC 479
Query 500 GGGAAATCCAGTTTTCCAAATCGACGGCGACGGAGTTAGGGAATTGAGTTGCGACGTTGC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GGGAAATCCAGTTTTCCAAATCGACGGCGACGGAGTTAGGGAATTGAGTTGCGACGTAGT 539
Query 560 CGGATTCCTCAAGGGACTCGGTCGATCGGAAGTGCAGACGGAGGATCGAAGACG--G-AG 616
|||||| ||||||||| |||||||||| ||| || ||||||||||||| |||| | ||
Sbjct 540 CGGATTTCTCAAGGGAATCGGTCGATCAGAAACGCCGACGGAGGATCGACGACGAAGGAG 599
Query 617 ACGA--A-G-AG--TGGAGTTCTGGAGTGATGTGGCGGAGCGAGGGAGATTTGTGGTGGC 670
|||| | | || ||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 600 ACGACCACGGAGAGTGGAGTTTTGGAGCGATGTGGCGGAGGGATGGAGATTTGTGGTGGC 659
Query 671 GCGTGAT-ACCACGCGCGATTGGTGGAGTGCGTTGGGTTTAGAGGGGTTAAGGGATTGTT 729
||||||| || ||||||||||||||||| ||||| ||||| |||||||||| || ||||
Sbjct 660 GCGTGATTAC-ACGCGCGATTGGTGGAGCGCGTTAGGTTTTGAGGGGTTAACGGCGTGTT 718
Query 730 TGGACGACGCGTTTTGGAAGCTGAGGGAAGGAGGATGGACGGAAGATGAGGTTCGCGATA 789
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 719 TGGACGACGCGTTTTGGAAGCTGAGGGAAGCAGGATGGACGGAAGATGATGTTCGCGATA 778
Query 790 TGATGATGATGGACGGTGTAGATCGAGACACGTGGTGTACTA--AGCA---GCAAACGCA 844
|||||||||||||| | ||||||| | ||||||| | | | | |||| |||||||||
Sbjct 779 TGATGATGATGGACAGCGTAGATCAAAACACGTG-TATCC-AGCAGCAAACGCAAACGCA 836
Query 845 ATCGCGGGATGTGGTGTACGCGTTTGGCGGTGAGGAGA-TGGACGAAGGAGAT-GAAGAC 902
||||||||||||||||||||||||||||| ||||| || || ||||| ||||| || |||
Sbjct 837 ATCGCGGGATGTGGTGTACGCGTTTGGCGATGAGG-GAATGAACGAAAGAGATAGA-GAC 894
Query 903 ACGTGTACGGAGGAAGAGGATCA-CAAGAAACGCGAAGTGACGACGTTGAGGCATTTGCT 961
|||||||| ||||| |||||||| || |||| ||||||| |||||||||||||||||| |
Sbjct 895 ACGTGTACAGAGGACGAGGATCATCA-GAAAGGCGAAGTAACGACGTTGAGGCATTTGTT 953
Query 962 GCTTTTTGATCGTTTGATGAGCTAA 986
||||| |||||||||||||||||||
Sbjct 954 GCTTTATGATCGTTTGATGAGCTAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5