BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932254
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22850.1 | Symbols: AtbZIP6, bZIP6 | basic leucine-zipper 6 ... 1066 0.0
> AT2G22850.1 | Symbols: AtbZIP6, bZIP6 | basic leucine-zipper
6 | chr2:9732475-9733342 REVERSE LENGTH=868
Length=868
Score = 1066 bits (577), Expect = 0.0
Identities = 680/729 (93%), Gaps = 9/729 (1%)
Strand=Plus/Plus
Query 1 ACAATTTTGAACCGGTCATTATGATGTCTACTGTACCGGCCTTTTCCTTTACTGAACCGG 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 39 ACAATTTTAAACCGGTCATTATGATGTCTACTGTACCGGCCTTTACCTTTACTGAACCGG 98
Query 61 GTTTGGTTAACCCAA-TATCGGATTTCCAGACCGGATTCACTCCTTGGGAGTTGGACTGC 119
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 99 GTTTGGTTAA-CCAATTATCGGATTTCCAGACCGGATTCACTCCTTGGGAATTGAACTGC 157
Query 120 TCCGATCTCTTCTCTGCTATCCATCTTGAACCGGTCGTACCGAGTCCTTGTTCTGGTGAA 179
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 158 TCCGATCTCTTCTCTACAATCCATCTCGAACCGGTCGTACCGAGTCCTTGTTCTGGTGAA 217
Query 180 TCCGAAACCGGTTCTGTCAAAATTAACACCGGTTTTAACGGTTTTGACGAATCTTATATC 239
||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 218 TCCGATGCCGGTTCTGTCAAAATTAACACCGATTTTAACGGTTTTGACGAATCGTGTATC 277
Query 240 GGTTCCATCAAAACGAACTCCGGTTCTGATGATTCCAACCTTTTCCACGGCGTACCAAGT 299
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 278 GGTTCCATCAAAACTAACTCCGGTTCTGATGATTCCAACCTTTTCCACGGCGTACCGAGT 337
Query 300 CCTCAATCCGACGAATTGGACTCGGACAACACGAAAATCCGGATTAACGCCCCAGAC-CA 358
||||||||||||||||||||||| | |||||||||||||| | ||||||| | || ||
Sbjct 338 CCTCAATCCGACGAATTGGACTCAAAAAACACGAAAATCCGAAGTAACGCCAC-GAATCA 396
Query 359 TAACCGGAATAAATTGAACCGGCCGGTTTTGCAGGTGACTGACGACCGTAAACGGAAACG 418
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 397 TAACCGGAACAAATTGAACCGGTCGGTTTTGCAGGTGACTGACGACCGTAAACGCAAACG 456
Query 419 GATGGAATCAAACCGAGAATCAGCAAAGCGGTCGAGGATGCGTAAACAAAGTCACATTGA 478
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 457 GATGGAATCAAACCGAGAATCAGCGAAGCGGTCGAGGATGCGTAAACAAAGACACATTGA 516
Query 479 GAATCTAAAAGACGAAGCAAACCGGCTCGGTTTAGAAAACCGGGAACTCGCAAACCGGCT 538
||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 517 TAATTTAAAAGACGAAGCAAATCGTCTCGGTTTAGAAAACCGGGAACTCGCAAACCGGCT 576
Query 539 CCGAATCGTTTTGTACAACATCGAACTAATGTGTACGGACAACAATCGGCTTTTGTCGGA 598
||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 577 TCGAATTGTTTTGTACAACATCGCATTAATGTGTACGGACAACAATCAGCTTTTGTCGGA 636
Query 599 ACAAGAGATTCTCAGACGAAGATTCTTGGAGATGAGGCAGATTTTGATTCTCAGACAGCT 658
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 637 ACAAGAGATTCTCAGACGGAGATTCTTGGAGATGAGGCAGATTTTGATTTTCAGACAGCT 696
Query 659 TCAGCAGAATCCATCATTGATCATCAATCATCAACAAATGATTTGA--Gaaaaaatagaa 716
||||| ||||||||||||||||||||||||||| || ||||||||| ||||||| | ||
Sbjct 697 TCAGCTGAATCCATCATTGATCATCAATCATCATCATATGATTTGAAAGAAAAAA-A-AA 754
Query 717 -agaaaaaa 724
||||||||
Sbjct 755 TAGAAAAAA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5