BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932255

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22860.1 | Symbols: ATPSK2, PSK2 | phytosulfokine 2 precurso...   425    9e-119


> AT2G22860.1 | Symbols: ATPSK2, PSK2 | phytosulfokine 2 precursor 
| chr2:9737607-9738298 FORWARD LENGTH=544
Length=544

 Score =  425 bits (230),  Expect = 9e-119
 Identities = 283/307 (92%), Gaps = 9/307 (3%)
 Strand=Plus/Plus

Query  1    TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCCCTGCTCACGATAGCTCTTCTCC  60
            |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||
Sbjct  40   TCAAAGAAAATATCACAAAAATGGCAAACGTCTCCGCTTTGCTCACCATAGCTCTTCTCC  99

Query  61   TGTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCGTCTCTATTACGA  120
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  100  TTTGCTCCACGCTAATGTGCACTGCCCGCCCCGAACCGGCCATCTCCATCTCTATCACGA  159

Query  121  CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATG--A--C--A  174
            |||||||||||||||||||||||||||||||||||||||||||||||||||  |  |  |
Sbjct  160  CTGCTGCCGATCCATGTAACATGGAGAAGAAGATAGAAGGAAAATTAGATGACATGCATA  219

Query  175  TGGTAGAAGAAAACTGTGGTTCCGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG  234
            ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  220  TGGTAGACGAAAACTGTGGTGCAGACGACGAAGATTGCTTAATGAGGAGGACTTTGGTCG  279

Query  235  CTCATACTGATTACATCTATACCCAGAAGAAGAAGAAGAATCTTTGAGTTTCACTAATTT  294
            ||||||||||||||||||||||||||||||||||| |   || |||| ||||||| | | 
Sbjct  280  CTCATACTGATTACATCTATACCCAGAAGAAGAAGCA---TCCTTGATTTTCACTTACTC  336

Query  295  ATTTCTA  301
            |||||||
Sbjct  337  ATTTCTA  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5