BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932264
Length=320
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22910.1 | Symbols: NAGS1 | N-acetyl-l-glutamate synthase 1 ... 324 4e-88
> AT2G22910.1 | Symbols: NAGS1 | N-acetyl-l-glutamate synthase
1 | chr2:9749869-9752863 FORWARD LENGTH=2075
Length=2075
Score = 324 bits (175), Expect = 4e-88
Identities = 210/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 27 GGGAGCAATATCTTTGATGATTGAAGCCAAACTATCTCCCGGACCTTCCATTTACAATAT 86
||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 626 GGGAGCAATATCTGTAATGATTGAGGCCAAACTATCTCCCGGACCTTCTATTTACAATAT 685
Query 87 ACGCCGACATGGTGATAGTAGTTGTCTGCATGAAACAGGTGTTAGAGTCGACACTGGTAC 146
|||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||||
Sbjct 686 ACGCCGACATGGTGATAGTAGTCGTTTGCATGAAACAGGCGTTAGGGTCGATACTGGTAA 745
Query 147 CTTCTTTGCAACAAATAGAAGAGGTATTGTTGATGGTGTGGATTTTGGAGCAACTGGTTT 206
|||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 746 CTTCTTTGCAGCAAAGAGAAGAGGTGTTGTTGATGGTGTTGATTTTGGAGCAACTGGTTT 805
Query 207 AGTGAAGAAGATAGATGTAGATCAGA-TCCGTGAGTGGCTTGATAGT 252
||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 806 AGTGAAGAAGATAGATGTAGATC-GAATCCGTGAGAGGCTTGATAGT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14879253704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5