BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932265
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22941.1 | Symbols: | Defensin-like (DEFL) family protein |... 139 1e-32
> AT2G22941.1 | Symbols: | Defensin-like (DEFL) family protein
| chr2:9762105-9762443 FORWARD LENGTH=249
Length=249
Score = 139 bits (75), Expect = 1e-32
Identities = 184/232 (79%), Gaps = 25/232 (11%)
Strand=Plus/Plus
Query 40 TCATCACTTATATGGTGATTTTCTTGATTTTGACAGTAGGAATATCAAGAGTAACAG-CA 98
||||||||||||||||||||||||||||||| |||| | |||||||||||||| || |
Sbjct 29 TCATCACTTATATGGTGATTTTCTTGATTTTAACAG--G-AATATCAAGAGTAA-AGGCT 84
Query 99 AAGAAGCCACCATGTAAAGAAGGTCGAATCGCGTAT----CA--T---CCTTGTAGTCAG 149
||||||||||||||| |||||| |||| ||| ||| || | ||||||||| |
Sbjct 85 AAGAAGCCACCATGTCTAGAAGGCCGAACCGCATATGTGTCACCTGGTCCTTGTAGTAAC 144
Query 150 AGTCTATGCGCACAAGACTGC-GCGCTTGCTGGTGTTTATCGCACAGGCAAATGTGAACC 208
||||||||| ||||||| ||| | || ||||||| | ||| ||| ||||||||| ||
Sbjct 145 AGTCTATGCACACAAGATTGCAG-GCCTGCTGGT-T--ATCACACTGGCAAATGTAAAGT 200
Query 209 TGA-TAGGAACAA-AGTAGTTTGCAAATGTTACGGATGCA-AATAGGTGTAG 257
||| | || ||| | | |||| |||||||| ||||||| || ||||||||
Sbjct 201 TGAGT-GGT-CAACACCAATTTGTAAATGTTATGGATGCAGAA-AGGTGTAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5