BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932268
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22960.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 761 0.0
AT2G22990.3 | Symbols: SNG1, SCPL8 | sinapoylglucose 1 | chr2:9... 414 4e-115
AT2G22955.1 | Symbols: | other RNA | chr2:9770700-9771553 REVE... 202 3e-51
AT2G22970.3 | Symbols: SCPL11 | serine carboxypeptidase-like 11... 139 3e-32
AT2G23010.2 | Symbols: SCPL9 | serine carboxypeptidase-like 9 |... 137 1e-31
AT1G73290.1 | Symbols: scpl5 | serine carboxypeptidase-like 5 |... 91.6 8e-18
> AT2G22960.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:9770894-9772932 FORWARD LENGTH=555
Length=555
Score = 761 bits (412), Expect = 0.0
Identities = 517/566 (91%), Gaps = 13/566 (2%)
Strand=Plus/Plus
Query 21 ATGAGAACTTTGTCACTGAAGTTGCTGCTTCTGCTTCTGCTTGTCTTGAGACATCATGCT 80
||||||||||| |||| |||||||||||||| ||| | ||||| || ||||||||||||
Sbjct 1 ATGAGAACTTTTTCACCCAAGTTGCTGCTTCTTCTTTTACTTGTTTTAAGACATCATGCT 60
Query 81 GATTCCGGCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTA 140
|| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTTTCGAACTT 120
Query 141 GAAACCGGGTTTGGGTACCA-CAGTGCACTAGCTACATATTGGGCCAATAACGAGAGGGT 199
|||||| ||||| || | | | | | |||| ||||||||||||| ||||||||||
Sbjct 121 GAAACC------GGGTA-CATC-G-GTA-TTGCTAAATATTGGGCCAATGACGAGAGGGT 170
Query 200 TCGTGAAGCTCTTCAAATCAGGAAGGGAAGTATAGGAAAATGGATACGATGTAATAGGAA 259
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 171 ACGTGAAGCTCTTCAAATAAGAAAGGGAAGTATAGGAAAATGGATACGATGTAATTCGAA 230
Query 260 TATTGATTACAATGAAGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 319
||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TATACATTACGATGACGACATTATTAGCAGCATACCATATCATATGAATAACAGCATCAA 290
Query 320 CGGATACCGATCTCTTATTTACAGTGGTGATCACGACATGGAGGTACCTTTCCTTGCAAC 379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 291 CGGATACCGATCTCTTATTTACAGTGGTGATCACGATATGGAGGTACCTTTCCTTGCAAC 350
Query 380 TGAAGCTTGGATAAGATCTCTCAATTATCCTATCATTGATGATTGGAGGCCTTGGATAAT 439
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 351 TGAAGCTTGGATAAGATCTCTTAATTATCCTATTATTGATGATTGGAGGCCTTGGATAAT 410
Query 440 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTGT 499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 411 AAACAATCAGATTGCTGGATACACGATGACCTATGCCAATAAGATGACATATGCTACTAT 470
Query 500 CAAAGG-AGGTGGGCACACTGCAGAGTATAAACCAGAGGAGAGCTTTATCATGTTCCAAA 558
||| || | |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 471 CAA-GGCAAGTGGACACACTGCAGAGTATAAACCAGCGGAGAGCTTTATCATGTTCCAAC 529
Query 559 GATGGATAAGTGGCCAACCTCTGTAA 584
||||||| |||||||| |||||||||
Sbjct 530 GATGGATCAGTGGCCAGCCTCTGTAA 555
> AT2G22990.3 | Symbols: SNG1, SCPL8 | sinapoylglucose 1 | chr2:9786316-9790179
FORWARD LENGTH=1635
Length=1635
Score = 414 bits (224), Expect = 4e-115
Identities = 364/431 (84%), Gaps = 11/431 (3%)
Strand=Plus/Plus
Query 179 TTGGGCCAATAACGAGAGGGTTCGTGAAGCTCTTCA-AATCAGGAAGGGAAGTATAGGAA 237
|||||| || ||||||| ||||| ||||||||||| | | | ||||| |||| |||||
Sbjct 974 TTGGGCTAACGACGAGAGCGTTCGCGAAGCTCTTCATATTGA-AAAGGGTAGTAAAGGAA 1032
Query 238 AATGGATACGATGTAATAGGAATATT-GATTACAATGAAGACATTATTAGCAGCATACCA 296
||||| ||||||||| ||| |||| | |||||| | |||||| | ||||||||||||
Sbjct 1033 AATGGGCGCGATGTAATCGGACTATTCCA-TACAATCACGACATTGTAAGCAGCATACCA 1091
Query 297 TATCATATGAATAACAGCATCAACGGATACCGATCTCTTATTTACAGTGGTGATCACGAC 356
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1092 TATCACATGAATAACAGCATCAGTGGATACCGATCTCTTATTTACAGTGGTGATCACGAC 1151
Query 357 ATGGAGGTACCTTTCCTTGCAACTGAAGCTTGGATAAGATCTCTCAATTA-TCCTATCAT 415
|| | ||| ||||| ||||||||| |||| |||||||||||||||||||| ||| |||
Sbjct 1152 ATCGCGGTCCCTTTTCTTGCAACTCAAGCCTGGATAAGATCTCTCAATTACTCCCC-CAT 1210
Query 416 TGATGATTGGAGGCCTTGGATAATAAACAATCAGATTGCTGGATACACGATGACCT-ATG 474
| || | |||||||| ||||| ||||||||||| || ||||||||||||| || || ||
Sbjct 1211 TCATAACTGGAGGCCATGGATGATAAACAATCAAATCGCTGGATACACGA-GAGCTTATT 1269
Query 475 CCAATAAGATGACATATGCTACTGTCAAAGGAGGTG-GG-CACACTGCAGAGTATAAACC 532
||||||||||||||| ||||||| |||||| | ||| || ||||| |||||||||| |||
Sbjct 1270 CCAATAAGATGACATTTGCTACTATCAAAGCAAGTGTGGACACACGGCAGAGTATAGACC 1329
Query 533 AGAGGAGAGCTTTATCATGTTCCAAAGATGGATAAGTGGCCAACCTCTGTAATAAAAGAG 592
| | |||| |||||||||||||||||| ||||| ||||||||||| |||||| ||||| |
Sbjct 1330 AAACGAGACCTTTATCATGTTCCAAAGGTGGATCAGTGGCCAACCCCTGTAACAAAAG-G 1388
Query 593 ATGATGGCCTT 603
| ||| ||||
Sbjct 1389 CTTATGACCTT 1399
Score = 145 bits (78), Expect = 6e-34
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 49 TTCTGCTTCTGCTTGTCTTGAGA-CATCATGCTGATTCCGGCTCCATCGTCAAGTTTCTT 107
|||||||||||||||||||| | ||||||| |||||| | ||| |||||||||||||||
Sbjct 97 TTCTGCTTCTGCTTGTCTTG-TATCATCATGTTGATTCTGCCTCTATCGTCAAGTTTCTT 155
Query 108 CCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTAGAAACCGGGT 150
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 156 CCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGT 198
> AT2G22955.1 | Symbols: | other RNA | chr2:9770700-9771553 REVERSE
LENGTH=546
Length=546
Score = 202 bits (109), Expect = 3e-51
Identities = 135/148 (91%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 6 AAATTAACAGAGAAAATGAGAACTTTGTCACTGAAGTTGCTGCTTCTGCTTCTGCTTGTC 65
|||||||||||||||||||||||||| |||| |||||||||||||| ||| | |||||
Sbjct 367 AAATTAACAGAGAAAATGAGAACTTTTTCACCCAAGTTGCTGCTTCTTCTTTTACTTGTT 308
Query 66 TTGAGACATCATGCTGATTCCGGCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCT 125
|| |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 307 TTAAGACATCATGCTGAATCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCT 248
Query 126 CTTCCTTTCGAACTAGAAACCGGGTTTG 153
|||||||||||||| |||||||||||||
Sbjct 247 CTTCCTTTCGAACTTGAAACCGGGTTTG 220
> AT2G22970.3 | Symbols: SCPL11 | serine carboxypeptidase-like
11 | chr2:9774853-9778512 FORWARD LENGTH=1611
Length=1611
Score = 139 bits (75), Expect = 3e-32
Identities = 118/138 (86%), Gaps = 5/138 (4%)
Strand=Plus/Plus
Query 14 AGAGAAAATGAGAACTTTGTCACTGAAGTTGCTGCTTCTGCTTCTGCTTGTCTTGAGA-C 72
||||| |||| ||| || |||| || |||||| ||||||||||| || |||| | | |
Sbjct 16 AGAGAGAATG-GAA--TTAACACTAAAATTGCTGGTTCTGCTTCTGTTTATCTT-AAATC 71
Query 73 ATCATGCTGATTCCGGCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTT 132
|||||| || ||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 72 ATCATGTTGGTTCTGGCTCTATCGTCAAGTTTCTTCCCGGTTTTGAAGGCCCTCTTCCTT 131
Query 133 TCGAACTAGAAACCGGGT 150
||||||| ||||||||||
Sbjct 132 TCGAACTTGAAACCGGGT 149
> AT2G23010.2 | Symbols: SCPL9 | serine carboxypeptidase-like 9
| chr2:9798843-9802674 FORWARD LENGTH=1503
Length=1503
Score = 137 bits (74), Expect = 1e-31
Identities = 103/117 (88%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 35 ACTGAAGTTGCTGCTTCTGCTTCTGCTTGTCTTGAGACATCATGCT-GATTCCGGCTCCA 93
||| ||||| ||||||| |||| ||||||| ||| ||||||| | | ||| |||||||
Sbjct 12 ACTAAAGTTTATGCTTCTTATTCTACTTGTCTCGAGTCATCATGTTCG-TTCTGGCTCCA 70
Query 94 TCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCCTTTCGAACTAGAAACCGGGT 150
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 71 TCGTCAAGTTTCTTCCTGGTTTTAAAGGCCCTCTTCCTTTCGAACTTGAAACCGGGT 127
> AT1G73290.1 | Symbols: scpl5 | serine carboxypeptidase-like 5
| chr1:27556397-27558773 REVERSE LENGTH=1320
Length=1320
Score = 91.6 bits (49), Expect = 8e-18
Identities = 101/124 (81%), Gaps = 11/124 (9%)
Strand=Plus/Plus
Query 37 TGAAGTTGCTGCTTCTGCTTC-T--GCTTG---TCTTGA--GA-CATCATGCTGATTCCG 87
|||||| |||||||||||||| | |||| |||||| | || |||| |||||| |
Sbjct 29 TGAAGTCGCTGCTTCTGCTTCTTCATCTTGTCTTCTTGATTCAGCAGCATGTTGATTCTG 88
Query 88 GCTCCATCGTCAAGTTTCTTCCTGGTTTTGAAGGCCCTCTTCC-TTTCGAACTAGAAACC 146
||| ||||||||||||||||||||||||||||| ||||||| ||| || || ||||||
Sbjct 89 CCTCTATCGTCAAGTTTCTTCCTGGTTTTGAAGGGTCTCTTCCCTTT-GAGCTCGAAACC 147
Query 147 GGGT 150
||||
Sbjct 148 GGGT 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5