BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932286

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23067.1 | Symbols:  | Putative membrane lipoprotein | chr2:...   198    1e-50


> AT2G23067.1 | Symbols:  | Putative membrane lipoprotein | chr2:9822005-9822148 
FORWARD LENGTH=144
Length=144

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 137/150 (91%), Gaps = 8/150 (5%)
 Strand=Plus/Plus

Query  21   ATGGAAGTGAGACATGAAGCGTTGTCTACTGCTAATGAGAATGAGGTCATCATAGCTTCT  80
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGTGAGACATGGAGCGTTGTCTACTGCTAATGAGAATGAGGTCATCATAGCTTCT  60

Query  81   GCCATTTCAACACTCTCGTCTTGTCAAATCAAAACCATTAATTATCATCATCATCATGAT  140
            ||||||||| ||||||||||||||||||||||  ||||| |||||||||||      |||
Sbjct  61   GCCATTTCATCACTCTCGTCTTGTCAAATCAACGCCATTCATTATCATCAT------GAT  114

Query  141  TCATAC--ATCCCATGCATGGCAGACATAA  168
            ||||||  ||||||||||||||||||||||
Sbjct  115  TCATACGCATCCCATGCATGGCAGACATAA  144



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9400069063


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5