BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932290
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23080.1 | Symbols: | Protein kinase superfamily protein | ... 1585 0.0
> AT2G23080.1 | Symbols: | Protein kinase superfamily protein
| chr2:9827113-9829537 FORWARD LENGTH=1311
Length=1311
Score = 1585 bits (858), Expect = 0.0
Identities = 979/1038 (94%), Gaps = 6/1038 (1%)
Strand=Plus/Plus
Query 9 TTTTCAGATCAAAATTGATGTCGAAATCTAGGGTTTATACAGATGTTAACGTTGTTCGTC 68
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 99 TTTTCAGATCGAAATTGATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTGTTCGTC 158
Query 69 CCAAAGAGTATTGGGACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATG 128
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CTAAAGAGTATTGGGACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATG 218
Query 129 AGGTTGTGAGGAAAGTTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCA 188
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AGGTTGTGAGAAAAGTTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCA 278
Query 189 ATACGAATGAACGCTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGATAAAGA 248
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATACGAATGAGCGTTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGATAAAGA 338
Query 249 GGGAGATCAAAATACTTCAGAACCTCTGTGGTGGACCAAATATTGTTAAGCTGTATGATA 308
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 339 GAGAGATCAAAATACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTGTATGATA 398
Query 309 TTGTCAGAGATGAGCACTCAAAAACACCTAGCTTGATATTTGAGTTTGTCAACAGTGTGG 368
|||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 399 TTGTTAGAGATGAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGTGTGG 458
Query 369 ACTTTAAAGTATTGTATCCTACATTGACTGATTACGATATCCGGTACTATATTTATGAGC 428
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 459 ACTTTAAAGTATTGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGC 518
Query 429 TTCTGAAGGCACTGGATTTCTGCCATTCTCAAGGAATAATGCATAGGGATGTTAAGCCTC 488
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 519 TTCTGAAGGCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTC 578
Query 489 ATAATGTCATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 ATAATGTCATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTG 638
Query 549 AGTTCTACCATCCCGGAAAAGAGTATAATGTTCGAGTTGCTTC-ACGATACTTCAAGGGT 607
|||| ||||||||||||||||||||||||||||| || || || | ||||||||||||||
Sbjct 639 AGTTTTACCATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGA-GATACTTCAAGGGT 697
Query 608 CCCGAGCTGCTAGTGGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGCCTTGGC 667
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 698 CCCGAGCTTTTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGT 757
Query 668 TGCATGTTTGCTGGCATGATATTTCGCAAGGAACCGTTCTTCTATGGTCATGATAATCAT 727
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 758 TGCATGTTTGCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCAT 817
Query 728 GATCAACTTGTCAAAATCGCCAAGGTGTTGGGAACCGATGAGTTAAA-CACTTACCTTAA 786
||||||||||||||||| |||||||||||||||||| |||||||| | || |||||| ||
Sbjct 818 GATCAACTTGTCAAAATTGCCAAGGTGTTGGGAACCAATGAGTTAGATCA-TTACCTAAA 876
Query 787 TAAATATCAGCTGGATCTTGAACCTCAACTGGAAGCACTTGTTGGGAGGCATAACAGGAA 846
||||||||||| |||||||| ||||||||||||||||||||||| || ||| | ||
Sbjct 877 CAAATATCAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACATGTCCCCAA 936
Query 847 ACCATGGTCCAAGTTTATTAATGCCGACAATCAACACTTGGTCTCGCCAGAGGGCA-TTG 905
|||||||||||||||||| || || ||||| ||||| |||||||| || |||| || |||
Sbjct 937 ACCATGGTCCAAGTTTATCAACGCGGACAACCAACATTTGGTCTCACCTGAGG-CAATTG 995
Query 906 ATTTTCTCGATAAGCTTCTTCGGTATGATCATCAAGACAGATTGACCGCAAGAGAAGCCA 965
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 996 ATTTTCTCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCA 1055
Query 966 TGGATCATCCTTACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGACTACGAACTCAGT 1025
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGGATCATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGACTACGAACTCAGT 1115
Query 1026 GAAACCGAAGCTTGATTG 1043
|||||||||||||||||
Sbjct 1116 AAAACCGAAGCTTGATTG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5