BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932302

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23148.1 | Symbols:  | Plant self-incompatibility protein S1...   573    5e-163


> AT2G23148.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr2:9853618-9854156 FORWARD LENGTH=539
Length=539

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 400/442 (90%), Gaps = 11/442 (2%)
 Strand=Plus/Plus

Query  7    AAATCTAAAAAATAATGAAttttttttcgtatt-ttttAGTTGTTATTGTATTGTGTGCA  65
            |||||||| ||| |||||||| |||||||| || ||||| || ||||||| || ||||||
Sbjct  1    AAATCTAAGAAACAATGAATTGTTTTTCGTTTTCTTTTA-TTATTATTGTGTTATGTGCA  59

Query  66   GGATTGAGTAATGCGAAGTTCA-ACGaaaaaaaTTCTGTAGTTTTTAAGAATTCTCTTGG  124
            |||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct  60   GGATCGAGTAATGCGAAGTTCAGA-GAAAAAAATTCTGTAGTTTTTAAAAATTCTCTTGG  118

Query  125  TCCCAAAAACGTTCTCAAGATTCATTGTATATCAAAAGACGACGATCTAGGCTACAATTA  184
            |   ||||||||||||||||||||||||| ||||||||||||||| ||||||||| | ||
Sbjct  119  TGTGAAAAACGTTCTCAAGATTCATTGTACATCAAAAGACGACGACCTAGGCTACCACTA  178

Query  185  TTTAAGACCT-G-G-ACAAATCTACGAATTTAGTTTTCATGATAGTGTTTTGAAAACCAA  241
            ||| |||||| | | |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  179  TTTGAGACCTGGAGTACAAATCTACGAATTTCGTTTTCATGATAGTGTTTTGAAAACTAA  238

Query  242  ATTTGATTGTGAGTTATGGCAGGGACGTGGTCCTACTTACAAGTTTTATGCAAACTTTCG  301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct  239  ATTTGATTGTGAGTTATGGCAGGGACGTGGTCCTACTTACAAGTTTTATGCAAATTTTAG  298

Query  302  GGCGTACAAAGGTGGCGGTCTGATAGTTCAC-AGCGGTAAAAAGAACT-TTTGGGAAGTT  359
            ||| || ||| ||||||||||||||| |||| | |||||||||||| | ||||||||| |
Sbjct  299  GGCATATAAAAGTGGCGGTCTGATAGCTCACTA-CGGTAAAAAGAA-TATTTGGGAAGCT  356

Query  360  AGAGAAGATGGTATTTACTTTACACATGGTAAGGAAATACCTAAATTAGAGTATAAATGG  419
            |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct  357  AGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATTCCTAAATTAGAGTATAAATGG  416

Query  420  AGCCCCATAGGAGAGCCCCCTA  441
            |||||||||||| |||| ||||
Sbjct  417  AGCCCCATAGGAAAGCCTCCTA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22504897856


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5