BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932320
Length=301
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 403 4e-112
> AT2G23270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm
cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G37290.1);
Has 36 Blast hits to 35 proteins in 6 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:9903215-9903845 FORWARD LENGTH=631
Length=631
Score = 403 bits (218), Expect = 4e-112
Identities = 276/304 (91%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 1 CAAAAA-AGCACTCAAAGAAAATGATGATGAACAAAGTTGTATTGGGTTCAATTCTGTTT 59
|||||| | |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 76 CAAAAATACCACTCAAAGAAAATGATGATGAACAAAGTTGTTTTGGGTTCGTTTCTGTTT 135
Query 60 TTCATGTTGGTTAGTTCG-ATTCTTGTGACGGAGGCTCGTCCGTTGGGTTTAACGAAGGC 118
||||||||||| |||||| ||| ||||| |||||||||||| |||||||||||||||||
Sbjct 136 TTCATGTTGGTGAGTTCGAATT-TTGTGGTGGAGGCTCGTCCTTTGGGTTTAACGAAGGC 194
Query 119 TGAAGAGGAGCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATCAAGGAGTC 178
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 195 TGAAGAGAACCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATTAAGGAGTC 254
Query 179 GGGTCCTAGCTCTGGTGGTGAGGGTCATCAGTTCGTGGATCGAAGTGAGACGCTTGGATA 238
||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| |||
Sbjct 255 GGGTCCTAGCTCTGGTGGTGAGGGTCATCGGTTCGTGGACCGGACTGAGACGCTTGAATA 314
Query 239 TCGTAAGCAATCCGGTCCCAGCCCGAGCGGACCCGGTCACTAATTTCG-GACCGGACCAG 297
| ||||||| || ||||||||| |||| ||||||||||||||| ||| ||||| |||||
Sbjct 315 TGGTAAGCATTCAGGTCCCAGCACGAGTGGACCCGGTCACTAAGTTCCCGACCGAACCAG 374
Query 298 TTAA 301
||||
Sbjct 375 TTAA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13924166473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5