BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932320 Length=301 Score E Sequences producing significant alignments: (Bits) Value AT2G23270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 403 4e-112 > AT2G23270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9903215-9903845 FORWARD LENGTH=631 Length=631 Score = 403 bits (218), Expect = 4e-112 Identities = 276/304 (91%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 1 CAAAAA-AGCACTCAAAGAAAATGATGATGAACAAAGTTGTATTGGGTTCAATTCTGTTT 59 |||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 76 CAAAAATACCACTCAAAGAAAATGATGATGAACAAAGTTGTTTTGGGTTCGTTTCTGTTT 135 Query 60 TTCATGTTGGTTAGTTCG-ATTCTTGTGACGGAGGCTCGTCCGTTGGGTTTAACGAAGGC 118 ||||||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||| Sbjct 136 TTCATGTTGGTGAGTTCGAATT-TTGTGGTGGAGGCTCGTCCTTTGGGTTTAACGAAGGC 194 Query 119 TGAAGAGGAGCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATCAAGGAGTC 178 ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 195 TGAAGAGAACCTCGTGGCTAAGTTCTTCGATGGTTTGTCACTTGGGGCGATTAAGGAGTC 254 Query 179 GGGTCCTAGCTCTGGTGGTGAGGGTCATCAGTTCGTGGATCGAAGTGAGACGCTTGGATA 238 ||||||||||||||||||||||||||||| ||||||||| || | ||||||||||| ||| Sbjct 255 GGGTCCTAGCTCTGGTGGTGAGGGTCATCGGTTCGTGGACCGGACTGAGACGCTTGAATA 314 Query 239 TCGTAAGCAATCCGGTCCCAGCCCGAGCGGACCCGGTCACTAATTTCG-GACCGGACCAG 297 | ||||||| || ||||||||| |||| ||||||||||||||| ||| ||||| ||||| Sbjct 315 TGGTAAGCATTCAGGTCCCAGCACGAGTGGACCCGGTCACTAAGTTCCCGACCGAACCAG 374 Query 298 TTAA 301 |||| Sbjct 375 TTAA 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13924166473 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5