BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932325
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:99... 1029 0.0
> AT2G23310.1 | Symbols: ATRER1C1 | Rer1 family protein | chr2:9917520-9919258
FORWARD LENGTH=1107
Length=1107
Score = 1029 bits (557), Expect = 0.0
Identities = 642/682 (94%), Gaps = 10/682 (1%)
Strand=Plus/Plus
Query 2 ACACAGAGAGTATCCACCGATGGAATCCGCAGCTACGGCTGGTGTTCCCACTCCGGTAGC 61
||| ||||||||||||||||||||||||||||| ||||||| || | | |||||| |||
Sbjct 105 ACAGAGAGAGTATCCACCGATGGAATCCGCAGCAACGGCTGTTG-T-AC-CTCCGGCAGC 161
Query 62 CGCCGCCACCA---CCA---TCACCGATGATAATCTCCAATCGATCGACTCATCATCTCC 115
||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 162 CGCCGCCACCACCGCCACCGCCACCGATGATAATCTCCAATCAAGCGACTCATCATCTCC 221
Query 116 CGCCGACGCCGTTAACCGATTGATCCACGCCGTTTCGCAGCGACAACAACACCTTCTCGA 175
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 222 CGCCGACGCCGTTAACCGATTGATCCACGCCTTTTCGCAGCGACAACAACATCTTCTCGA 281
Query 176 CAAAACGGTGCCTCACGTTCTCTATCGGTGGATCGGTTGCCTCTGTGTCGTATTGATCTA 235
||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||||
Sbjct 282 CAAAACGGTTCCTCACGTTCTCTATCGATGGATCGCATGTCTCTGTGTTGTATTGATCTA 341
Query 236 CTTCGTTCGTGTTTACTTTGTGGAAGGCTTCTACATCATCACTTACGCCATCGGAATCTA 295
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 342 CATCGTTCGTGTTTACTTTGTGGAAGGCTTCTACATCATCACTTACGCCATCGGCATCTA 401
Query 296 CCTTTTGAATCTCATCATTGCTTTTCTTTCTCCTCAAGAAGATCCTGAAGCTTCTCTCAC 355
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 402 CCTTTTGAATCTCATCATTGCTTTTCTATCTCCTCAAGAAGATCCCGAAGCTTCTCTCAC 461
Query 356 TACCGGTGGTTCTCTTCCTACTCGGAGATCCGATGAGTATCGTCCTTTTGTTCGCCGTCT 415
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 462 TTCCGGTGGTTCTCTTCCTACTCGGAGATCCGATGAGTATCGTCCTTTCGTTCGCCGTCT 521
Query 416 CCCTGAGTTCAAATTCTGGTTATCGATCATAAGGGCATTCATCATCGGATTTATGATGAC 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 522 CCCTGAGTTCAAATTCTGGTTATCGATCATAAGGGCTTTCATCATCGGATTTATGATGAC 581
Query 476 GTTCTTCGACGTGTTTGATGTACCTGTTTTCTGGCCAATACTTCTTTTCTACTGGGTGAT 535
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 582 GTTCTTCGAGGTGTTTGATGTACCTGTATTCTGGCCAATACTTCTCTTCTACTGGGTGAT 641
Query 536 GTTGTTTTTCCTTACGATGAGGAAACAGATACAACATATGATCAAATACAGATATGTTCC 595
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 642 GTTGTTTTTCCTTACGATGAGGAAACAGATACAGCATATGATCAAATACAGATATGTCCC 701
Query 596 TTTCTCTTTCGGGAAAAAGCAGTATGGAAAGAAACCGGCTCCAACAGAGAGCAGTGAATG 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTTCTCTTTTGGGAAAAAGCAGTATGGAAAGAAACCGGCTCCAACAGAGAGCAGTGAATG 761
Query 656 ATCGATCAAA-CTGTTCAGGTC 676
||| |||||| |||||||||||
Sbjct 762 ATCAATCAAAACTGTTCAGGTC 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5