BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932329
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 ... 2994 0.0
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pr... 307 2e-82
> AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein
4 | chr2:9943053-9946269 FORWARD LENGTH=2373
Length=2373
Score = 2994 bits (1621), Expect = 0.0
Identities = 1892/2020 (94%), Gaps = 29/2020 (1%)
Strand=Plus/Plus
Query 20 aaaaaaaaTGGCTCAGGTTCAAGCTCCTTCTTCACA-T-T-CTCCTCCTCC-G--GTTGT 73
|||||||||||||||||||||||||||||||||||| | | |||||||||| | |||||
Sbjct 150 AAAAAAAATGGCTCAGGTTCAAGCTCCTTCTTCACATTCTCCTCCTCCTCCTGCTGTTGT 209
Query 74 TAACGACGGGTCGGTGACGGCTTCTGCTACACCTGGAA------TCGGCGGC---GGAGA 124
|||||||||| | | ||||||||||||||| ||||||| |||||||| |||||
Sbjct 210 TAACGACGGGGCTGCGACGGCTTCTGCTACCCCTGGAATCGGCGTCGGCGGCGGTGGAGA 269
Query 125 TGGAGTCAATCACGGTGCTCTTTGTTCTCTCTATGTTGGAGATCTGGATTTCAATGTTAC 184
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 270 CGGAGTCACTCACGGTGCTCTTTGTTCTCTCTATGTCGGAGATCTGGATTTCAATGTCAC 329
Query 185 GGATTCTCAGCTTTATGACTATTTCACCGAGGTTTGTCAGGTTGTTTCTGTTCGTGTTTG 244
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 330 CGATTCTCAGCTTTATGACTATTTCACCGAGGTGTGTCAGGTTGTATCTGTTCGTGTTTG 389
Query 245 TCGTGACGCTGCTACCAATACTTCTCTTGGTTATGGTTATGTCAACTACAGCAACACCGA 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCGTGATGCTGCTACCAATACTTCTCTTGGTTATGGTTATGTCAACTACAGCAACACCGA 449
Query 305 AGATGCGGAAAAGGCTATGCAGAAGTTGAACTATAG-TAGTCTCAATGGGAAGATGATTC 363
|||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 450 CGATGCGGAGAAGGCAATGCAGAAGTTGAACTACAGTTA-TCTCAATGGGAAGATGATTC 508
Query 364 GGATTACTTACTCGTCTCGTGACTCTTCTGCTCGCAGAAGTGGTGTTGGGAATTTGTTTG 423
||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 509 GGATTACTTACTCTTCTCGTGACTCTTCTGCCCGTAGAAGTGGGGTTGGGAATTTGTTTG 568
Query 424 TAAAGAATTTGGATAAGTCAGTTGATAACAAAACTCTGCACGAGACGTTTTCCGGGTGTG 483
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 569 TAAAGAATTTGGATAAGTCAGTTGACAACAAAACTCTGCACGAGGCGTTTTCCGGGTGTG 628
Query 484 GGACGATTGTGTCCTGTAAGGTTGCTGCTGATCATATGGGTCAGTCTAGAGGATATGGGT 543
|||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 629 GGACTATTGTGTCCTGTAAGGTTGCTACTGATCACATGGGTCAGTCTAGAGGATATGGGT 688
Query 544 TTGTGCAGTTTGATACTGAGGATTCAGCTAAGAATGCTATTGAGAAGCTGAATGGCAAAG 603
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 689 TTGTGCAGTTTGACACTGAGGATTCAGCTAAGAATGCTATTGAGAAGCTGAATGGGAAAG 748
Query 604 TGTTGAATGACAAACAGATTTTCGTTGGACCTTTTCTCCGTAAGGAGGAAAGAGAGTCTG 663
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 749 TGTTGAATGACAAACAGATTTTTGTTGGACCTTTTCTTCGTAAGGAGGAAAGAGAGTCTG 808
Query 664 CTGCTGATAAGATGAAGTTTACCAATGTTTATGTGAAGAATCTGTCGGAGGCGACTACTG 723
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 809 CTGCTGATAAGATGAAGTTTACTAATGTTTATGTGAAGAATCTTTCGGAGGCGACTACTG 868
Query 724 ATGATGAGTTGAAGACTACTTTTGGTCAGTATGGTAGTATTTCGAGCGCTGTGGTTATGA 783
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 869 ACGATGAGTTGAAGACTACTTTTGGTCAGTATGGTAGTATCTCGAGCGCTGTAGTTATGA 928
Query 784 GGGACGGAGATGGGAAATCTAGGTGTTTTGGATTTGTCAACTTTGAGAATCCTGAAGATG 843
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGGATGGAGATGGGAAATCCAGGTGTTTTGGATTTGTCAACTTTGAGAATCCTGAAGATG 988
Query 844 CTGCCCGTGCTGTTGAAGCTCTTAACGGAAAGAAGTTTGATGATAAGGAGTGGTATGTTG 903
| || ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 989 CAGCTCGTGCTGTTGAAGCTCTCAATGGAAAGAAGTTTGATGATAAGGAGTGGTATGTGG 1048
Query 904 GTAAAGCTCAGAAGAAATCTGAGAGGGAACTTGAGTTGAGCCGAAGATATGAACAAGGCT 963
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1049 GTAAAGCTCAGAAGAAATCTGAGAGGGAACTTGAGTTGAGCCGGAGATATGAACAAGGCT 1108
Query 964 CAAGTGATGCAGGAAACAAGTTTGATGGGTTGAATTTATATGTTAAAAACCTTGATGATA 1023
||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1109 CAAGTGATGGTGGAAACAAATTTGATGGGTTGAATTTATATGTTAAGAACCTTGATGATA 1168
Query 1024 CCGTCACCGATGAAAAGTTGCGTGAGTTGTTTGCTGAATTTGGTACAATTACGTCTTGCA 1083
||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||
Sbjct 1169 CCGTCACCGATGAGAAGTTGCGCGAGTTGTTTGCCGAATTTGGTACAATCACCTCTTGCA 1228
Query 1084 AGGTTATGCGGGACCCTAGTGGTACTAGCAAAGGATCAGGATTTGTTGCCTTCTCTGCTG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AGGTTATGCGGGACCCTAGTGGTACTAGCAAAGGATCAGGATTTGTTGCCTTCTCTGCTG 1288
Query 1144 CCAGTGAAGCTTCTAGAGTGCTGAATGAAATGAATGGTAAAATGGTTGGTGGTAAACCAT 1203
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1289 CCAGTGAAGCTTCAAGAGTGCTGAATGAAATGAATGGTAAAATGGTTGGTGGCAAACCGT 1348
Query 1204 TGTATGTCGCTCTTGCACAGAGGAAAGAAGAAAGAAGGGCTAAGCTGCAGGCTCAGTTTT 1263
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1349 TGTATGTTGCTCTTGCACAGAGGAAAGAAGAAAGGAGGGCTAAGCTGCAGGCACAGTTTT 1408
Query 1264 CTCAAATGAGACCTGCTTTTATCCCCGGTGTGGGTCCTCGAATGCCAATATTTCCAGGTG 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1409 CTCAAATGAGACCTGCTTTTATCCCCGGTGTGGGTCCTCGAATGCCAATATTTACAGGTG 1468
Query 1324 GTGCTCCAGGTCTTGGACAACAGATCTTTTACGGTCAAGGGCCTCCACCAATCATCCCTC 1383
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1469 GTGCTCCAGGTCTTGGACAACAGATTTTTTACGGTCAAGGACCTCCACCAATCATCCCTC 1528
Query 1384 ACCAGCCTGGATTCGGTTATCAGTCTCAGCTGGTTCCTGGATTGAGACCAACCTTTTTC- 1442
||||||||||||| || |||||| ||||||||||||||||| |||| || |||||||
Sbjct 1529 ACCAGCCTGGATTTGGATATCAGCCTCAGCTGGTTCCTGGAATGAGGCCGGCCTTTTTTG 1588
Query 1443 -----CCGATGATGCAGCCTGGTCAGCAAGGTCCACGACCAGGTGGCAGGCGGTCAGGCG 1497
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1589 GTGGACCGATGATGCAGCCAGGTCAGCAAGGTCCACGACCAGGTGGCAGACGGTCAGGTG 1648
Query 1498 ATGGACCCATGCGCCCCCAGCATCAGCAGCCAATGCCTTATATGCAGCCTCAGATGATGC 1557
||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1649 ATGGACCCATGCGCCATCAGCATCAGCAGCCAATGCCTTACATGCAGCCACAGATGATGC 1708
Query 1558 CAAGAGGACGCGGATACCGTTACCCTCCTGGTGGTAGAAACATGCCTGACGGTCCAATGC 1617
|||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1709 CAAGAGGACGAGGGTACCGGTACCCTTCTGGTGGTAGAAACATGCCTGACGGTCCAATGC 1768
Query 1618 TAGGAGGCATGGTTCCAGTTGCCTATGACATGAATGGAATGCC-TATTGCTCAGCCTATG 1676
|||||| |||||||||||||| ||||||||||||| |||||| ||| | ||||||||||
Sbjct 1769 CAGGAGGAATGGTTCCAGTTGCTTATGACATGAATGTAATGCCGTATAG-TCAGCCTATG 1827
Query 1677 TCTGCTGGTCAATTGGCTACTTCCCTTGCTAATGCTACACCTGCTCAACAGAGAACACTT 1736
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TCCGCTGGTCAATTGGCTACTTCCCTTGCTAATGCTACACCTGCTCAACAGAGAACACTT 1887
Query 1737 CTTGGTGAGAGTCTATACCCATTAGTGGATCAGATAGAGCA-TGAGAACGCTGCGAAAGT 1795
||||||||||||||||| ||||||||||| ||||||||| | |||| |||||||||||||
Sbjct 1888 CTTGGTGAGAGTCTATATCCATTAGTGGACCAGATAGAG-AGTGAGCACGCTGCGAAAGT 1946
Query 1796 GACTGGTATGCTTCTAGAAATGGATCAGACCGAGGTTTTGCATCTGCTCGAGTCACCAGA 1855
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 GACTGGTATGCTTCTGGAAATGGATCAGACCGAGGTTTTGCATCTGCTCGAGTCACCAGA 2006
Query 1856 GGCTCTAAATGCCAAAGTTTCAGAGGCATTGGATGTGTTGAGGAATGTGAACCAGCCATC 1915
|||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 2007 GGCTCTAAATGCCAAAGTTTCAGAGGCATTAGATGTGTTGAGAAACGTGAATCAGCCATC 2066
Query 1916 AACACAGGTGA-GTGAAGGCAACAAAAGTGGAAGCCCAAGTGATCTCATGGCTTCACTTT 1974
|||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2067 TTCACAGG-GAAGTGAAGGCAACAAAAGTGGAAGTCCAAGTGATCTCTTGGCTTCACTTT 2125
Query 1975 CCATTAATGATCACTTATGAGAAGCTTTTGTTCGAGTTTT 2014
|||| |||||||| ||||||||||||||||||||||||||
Sbjct 2126 CCATCAATGATCATTTATGAGAAGCTTTTGTTCGAGTTTT 2165
> AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336387-16340098 FORWARD LENGTH=2441
Length=2441
Score = 307 bits (166), Expect = 2e-82
Identities = 784/1075 (73%), Gaps = 71/1075 (7%)
Strand=Plus/Plus
Query 395 TCGCAGAAGTGGTGTTGGGAA-TTTGTTTGTAAAGAATTTGGATAAGT-CAGTTGATAAC 452
|||| ||||||| | ||| || || ||| | ||||||||||| ||| || | || ||
Sbjct 699 TCGCCGAAGTGGCGCTGGCAACATT-TTTATTAAGAATTTGGACGAGTCCA-TCGACCAC 756
Query 453 AAAACTCTGCACGAGACGTTTTCCGGGTGTGG-GACGATTGTGTCCTGTAAGGTTGCTGC 511
||| | ||||| || || ||||| || ||| || |||||||| || ||||| ||||
Sbjct 757 AAAGCACTGCATGATACTTTTTCATCGTTTGGAAAC-ATTGTGTCGTGCAAGGTAGCTG- 814
Query 512 T-GA-TCATAT-GGGTCAGTCTAGAGGATATGGGTTTGTGCAGTTTGATACTGAGGATTC 568
| || || | | || ||||| | ||| |||||||||||||| | | | ||| || ||
Sbjct 815 TCGATTC-T-TCAGGCCAGTCAAAAGGCTATGGGTTTGTGCAATACGCCAATGAAGAATC 872
Query 569 AGCTAAGAATGCTATTGAGAAGCTGAATGGCAAAG-TGTTGAATGACAAAC-AGAT-TTT 625
|| |||| ||||| ||||| ||||| ||| | | || | |||||||| | || | | |
Sbjct 873 TGCCCAGAAAGCTATAGAGAAACTGAACGGC-ATGTTGCTCAATGACAAGCAAG-TGTAT 930
Query 626 CGTTGGACCTTTTCTCCGTAAG-GAGGAAAGAGAGTCTGCTGCTGATAAGATGAAGTTTA 684
|| || ||||| || | || | |||||||| || ||||| | || | ||| || |
Sbjct 931 -GTGGGTCCTTTCCTGAG-GAGACAAGAAAGAGACTCCACTGCTAACAAAACGAAATTCA 988
Query 685 CCAATGTTTATGTGAAGAATCT-GTCGG-AGGCGACTACTGATGATGAGTTGAAGACTAC 742
||||||| |||||||||||||| | ||| | | ||||| |||||||| ||||||| | |
Sbjct 989 CCAATGTGTATGTGAAGAATCTCG-CGGAAAG-TACTACCGATGATGACTTGAAGAATGC 1046
Query 743 TTTTGGTC-AGTATGG-TAGTATTTCGAGCGCTGTGGTTATGAGGGACGGAGATGGGAAA 800
|||||| | ||||||| || || | || ||||| || |||| || ||||| |||||
Sbjct 1047 TTTTGG-CGAGTATGGAAAG-ATAACAAGTGCTGTCGTGATGAAAGATGGAGAAGGGAAG 1104
Query 801 T-CTAGGTGTTTTGGATTTGTCAACTTTGAGAATCCTGAAGATGCTGCCCGTGCTGTTGA 859
| | ||| | ||||| |||||||||||||| ||| |||| |||||||| | |||| ||
Sbjct 1105 TCCAAGG-GCTTTGGGTTTGTCAACTTTGAAAATGCTGATGATGCTGCTAGGGCTG-TGG 1162
Query 860 AG-CTCTTAACGGAAAGAAGTTTGATGATAAGGAGTGGTATGTTGGTAAAGCTCAGAAGA 918
|| |||| || || | || |||||||||||||||||||||||||||| ||| |||||||
Sbjct 1163 AGTCTCTCAATGGGCACAAATTTGATGATAAGGAGTGGTATGTTGGTAGAGCCCAGAAGA 1222
Query 919 AATCTGAGAGGGAA-CTTGAGTTGAGCCGAA-GATATGAACA-AGGCTCAAGTGATGCAG 975
| || ||||||||| | || || || | | |||||||| | | ||| || || |
Sbjct 1223 AGTCAGAGAGGGAAACA-GAATTAAGG-GTCCGTTATGAACAGAATTTGAAG-GAAGCTG 1279
Query 976 GAAACAAGTTTGATGGGTTGAAT-TTATATGTTAAAAACCTTG-ATGATACCGTCACCGA 1033
| |||||||| | | || || || |||||||| || ||| || || | | | ||
Sbjct 1280 CAGACAAGTTTCAAAG-TTCAAACTTGTATGTTAAGAAT-TTGGATCCTAGCATTTCAGA 1337
Query 1034 TGA-AAAGTTGCGTGAGTTGTTTGCTGAATTTGGTACAATTACGTCTTGCAAGGTTATGC 1092
||| ||| || ||| | ||| || |||||||| |||| ||| ||||||| ||||
Sbjct 1338 TGAGAAACTTAAA-GAGATCTTTTCTCCTTTTGGTACCGTTACATCTAGCAAGGTGATGC 1396
Query 1093 GGGACCCTAGTGGTACTAGCAAAGGATCAGGATTTGTTGCCTTCTCTGCTGCC-AGTGAA 1151
|||| |||| ||| || |||||||| ||||| |||||||| ||| | || || | |||
Sbjct 1397 GGGATCCTAATGGAACAAGCAAAGGCTCAGGTTTTGTTGCTTTCGCAACTCCCGAA-GAA 1455
Query 1152 GCTTCTAGAGTGCTGAATGA-A-A-T-GAATGGTAAAATGGTTGGTGGTAAACCATTGTA 1207
|| || || ||| | || | | | || ||||||||| | | | || ||| | ||
Sbjct 1456 GCAACT-GAA-GCT-A-TGTCACAGTTGAGCGGTAAAATGATCGAAAGCAAGCCACTCTA 1511
Query 1208 TGTCGCTCTTGCACAGAGGAAAGAAGAAAGAAGGGCTAAG-CTGCAGGCTCAGTTTTCTC 1266
||| ||| |||||||| |||| ||||| ||||||| | || || |||||||||||||| |
Sbjct 1512 TGTGGCTATTGCACAGCGGAAGGAAGACAGAAGGG-TCAGACTACAGGCTCAGTTTTCCC 1570
Query 1267 AAATGAGACCTGCTTTTA-TCC--CCGG-TGTGGGTCCTCGAATGCCAATATTTCCAG-G 1321
|| |||| || | || | | | ||| ||| ||||| || |||||| | | ||| |
Sbjct 1571 AAGTGAGGCCAG-TTGCAATGCAGCCGTCTGTTGGTCCCCGCATGCCAGTGTATCCCCCG 1629
Query 1322 TGGTGCTCCAGGTCTTGGACAACAGATCTTTTACGGTCAAGGGCC-TCCA-CCAATCATC 1379
|||| ||| ||| |||||||||| || || || ||||| || || ||| ||| | ||
Sbjct 1630 -GGTGGTCCTGGTATTGGACAACAAATGTTCTATGGTCA-GGCCCCTCCTGCCA-TGATT 1686
Query 1380 CCTCACCAGCCTGGAT-TCGGTTATCAGTCT-CAGCTGGTTCCTGGATTGAGACC 1432
|||| ||||||||| | | || || || | ||||| ||||||||| |||||||
Sbjct 1687 CCTCCCCAGCCTGGGTAT-GGATACCAA-CAGCAGCTTGTTCCTGGAATGAGACC 1739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99798683460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5