BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932330
Length=2703
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23360.1 | Symbols: | Plant protein of unknown function (DU... 2531 0.0
> AT2G23360.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr2:9948903-9952845 FORWARD LENGTH=2897
Length=2897
Score = 2531 bits (1370), Expect = 0.0
Identities = 1590/1696 (94%), Gaps = 16/1696 (1%)
Strand=Plus/Plus
Query 1014 ACAAACATTGAAGCCTAGCCGAAGTAGCAATGTGTCCCATGAAGTCTCTCTTGCATCCGT 1073
|||||||||| |||| ||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1115 ACAAACATTG-AGCCAAGCAGGAGTAGCAATGTGTCACATGAAGTCTCTCTTGCATCCGT 1173
Query 1074 ATCAGAGTTTGAAAATGATGATAAAGTTAGCTGTGCCGATTCCTGGGCTTGTGCTTTACT 1133
| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1174 AACAGAGTTTGACAATGATGATAAAGTTAGCTGTGCCGATTCCTGGGCTTCTGCTTTACT 1233
Query 1134 TTCTGAGCTGGACAATTTCAAGAACAAGAAGCAAATGGG-ATCGAGTTTGGTTGGAACCC 1192
||| ||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 1234 TTCAGAGTTGGACAATTTCAAGAACAAGAAGGAAATGGGCA-CGAGTTTGGTTGGAACCC 1292
Query 1193 CTAAAGCTTCAGAGATGAAACTAATGGATGATTTTGCTGAAATGGAGAAGCTTGCAATGG 1252
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CTAAAGCTGCAGAGATGAAACTAATGGATGATTTTGCTGAAATGGAGAAGCTTGCAATGG 1352
Query 1253 TTGCAAGTACAATCGATAACCGACCTGGAAGTTCTCCTATTTGTCCTTCTGATTCCATTT 1312
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1353 TTGCTAGTACAATCGATAACCGACCTGGAAGTTCTCCTATTTGTTCTTCTGATTCTATTT 1412
Query 1313 CAGCTACTGGTCCGGTAGAGAACGAATCTAATGAGAATTCATCAGAGGTAACTAAAACTC 1372
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1413 CAGCTACTGGTCCGGTAGAGAACGAATCTAATGAGAATTCATCAGAAGCAACTAAAACTT 1472
Query 1373 CTGGAACAGATTATTCATTAAATCCTGCCGCAGCTCCCCAAGAT-AT-T-AAGTCAGATT 1429
||||||||| ||||||||| ||||||| ||| ||||| ||||| || | ||||||||||
Sbjct 1473 CTGGAACAGTTTATTCATTGAATCCTGATGCATCTCCCAAAGATGATATCAAGTCAGATT 1532
Query 1430 CGTTACCTCAATCTCTTCATATCGTCTTGAAAGCGGTAATGGAGCATAAGCGTATCACGC 1489
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1533 CGTTACCTCAATCTCTTCATATAGTCTTGAAAGCGGTAATGGAGCATAAGCATATCACGC 1592
Query 1490 ACAAAAACACTGATGAAGTACTTGAAGATATCAGGAAAGCTCTGTCAAGTGTTAACCATT 1549
| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1593 AGAGAAACACTGATGAAGTACTTGAAGATATCAGAAAAGCTCTGTCAAGTGTAAACCATT 1652
Query 1550 CAAGCTTTTCTGTGAAAAATCACCAGGAGAAAAAGACTATCACTGTGGAGGATAGACTAG 1609
|||||||||| | | ||| || ||||||| |||||| | ||||||||||||||||| |
Sbjct 1653 CAAGCTTTTC--T-ACAAACCATCAGGAGACTAAGACTCTTACTGTGGAGGATAGACTGG 1709
Query 1610 ATATGGAGTGTAATATCAGCAAATCGATTCACAGAATCATTGAAATTATTGAGGGAGTCA 1669
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 1710 ATATGGAGTGTAATATCAGCAAATCAATTCACAGAATCATTGACGTTATCGAGGGAGTCA 1769
Query 1670 ATCTAAAAGATGAGAGGCATGTGTCCAACGGAGAATCAGAAAGGCTTTCAGGTTACACTG 1729
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1770 GTCTTAAAGATGAGAGGCATGTGTCCAACAGAGAATCAGAAAGGCTTTCAGGTTACACTG 1829
Query 1730 CTCGCGTCTTGCAATGGAAAACTACAGAGCTAAGTAGTGTGTTGCAGCGATTTCTTCAAA 1789
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1830 CTCGCGTCTTGCAATGGAAAACTACAGAGCTAAGTAGTGTATTGCAGCGATTTCTTCAAG 1889
Query 1790 CTTGTTACGATCTGTTAGACAGAAAAGCAGACATGAAGAAGTTCGGGCAAGAGCTAAGCT 1849
||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1890 CTTGTTACGATCTATTAGACAGAAAAGCAGACATGAAGAAGTTTGCTCAAGAGCTAAGCT 1949
Query 1850 CTGTGTTGGAATGGATGACGAACCACTGTTTTTCTCTTCAAGATGTTTCAACCATGAGAG 1909
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 CTGTGTTGGAATGGATGGTGAACCACTGTTTTTCTCTTCAAGATGTTTCAACCATGAGAG 2009
Query 1910 ATGAGATTAAGAAGCAGTTCGAGTGGGATGAATCACGGAGCGGAAGCGAAGTTGATATTG 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 ATGAGATTAAGAAGCAGTTCGAGTGGGATGAATCACGGAGCGGAAGCGAAGTTGATATTG 2069
Query 1970 GAATATTTCGTCAGGTTTCAGAAGCAGAGAATCTTAAG-ACAGAAGATGTTTCCTTTTTG 2028
||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||
Sbjct 2070 GAATATTTCGTCAGGTTTCAGAAGCAGAGAAGCTT-AGAACGGAAGATGTTTCCTTTTTG 2128
Query 2029 GCTTGCAAAGATCAGTTGATTGAAGACAAACCTGGTAATCAAAAGTTGTTGAGCAACCCG 2088
|||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||
Sbjct 2129 GCTTGCAAAGATCAGTTGATTGAAGACAAACCTGGTAATCAAAACTTGTCGCGCAAAACG 2188
Query 2089 GTCGAAGAAGAGGCAAAGGACAAGAGATCGAGTGCTTCAGAGAACGAGCTCAAGCTGGAG 2148
|| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||
Sbjct 2189 GTTGAAGAAGAGGCAAATGACAAAACAGCGAGTGCTTCAGAGAACGAGCTCAAGCTGGAG 2248
Query 2149 GAAAAACAAAACATGCGAACCGAATTGGAAATCGCTGCTGCTTCAGAAAAGTTGGCGGAG 2208
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2249 GAAAAACAAAACATGCGAACCGAATTGGAAATCGCTGCTGCTTCAGAAAAGTTGGCCGAG 2308
Query 2209 TGTCAAGAGACGATTCTAAACCTGGGAAAGCAGCTCAAGGCATTAACTAACTCGAAAGAA 2268
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 2309 TGTCAAGAGACGATTCTAAACCTGGGAAAGCAGCTCAAGGCATTGACTAACTC-AAAGGA 2367
Query 2269 AGTACAGCTTTACTTTCAGAAAAACTGATGT-CTGACCTTACCGACAAATCAAACATTCT 2327
| ||||||||||||||||||| ||| |||| | ||| |||| |||||||| |||| ||
Sbjct 2368 A--ACAGCTTTACTTTCAGAAACACTCATGTAC-GACGTTACAGACAAATCGAACAACCT 2424
Query 2328 AGCTGGTGCACAACCTTCACAAGAGACTACTAAACCAGAGAAGAGATTGACCAGCCAGAG 2387
| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2425 ACCTGATGCACAACCTTCACATGAGACTACTAAACCAGAGAAGAGATTGACCAGCCAGAG 2484
Query 2388 ATCATCTCTTCTGGACCAGATGAAGGCAGAAGATCACAACACCGGGGAATCTAAGGATCA 2447
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2485 ATCATCTCTTTTGGATCAGATGAAGGCAGAAGATCACAACACCGGGGAATCCAAGGATCA 2544
Query 2448 GAAACCGCAAGCAGCAGATAAAAACGGAAAGGGAGGAAACAGTTCTGTTTACAATGAAAC 2507
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2545 GAAACCGCAAGCAGCAGATAAAAACGGAAAGGGAGGAAACAGCTCTGTTTACAATGAAAC 2604
Query 2508 CATTGAGGCATTGGAACAGATTCTTCTCTCAGACAAAAGCAAAGGCTCCGACTCAAACTG 2567
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2605 CATTGAGGCACTAGAACAGATTCTTCTCTCAGACAAAAGCAAAGGCTCCGACTCAAACTG 2664
Query 2568 CTTCGCCATTGTTCCTCAGAAAAAGAGCGGCGGAGTTAAGAGCCTCTGGAGAAAGCTGTT 2627
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2665 CTTTGCCATTGTTCCTCAGAAAAAGACCGGCGGAGTTAAGAGCCTCTGGAGAAAGCTGTT 2724
Query 2628 GGGGAGAAACAAGAAAAGTAAGGGCAAGAAGATCCCTAATCCATTTGCCAACTAAGAAGA 2687
||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2725 GGGGAGAAATAAGAAAGGTAAGAGCAAGAAGGTCCCTAATCCATTTGCCAACTAAGAAGA 2784
Query 2688 TGGTGTCATCTGTCAT 2703
||||| ||||||||||
Sbjct 2785 TGGTGGCATCTGTCAT 2800
Score = 1604 bits (868), Expect = 0.0
Identities = 965/1011 (95%), Gaps = 10/1011 (1%)
Strand=Plus/Plus
Query 3 TGGCTTG-TGGAGGTAATAAATGGACCATAAAGGATGGCCTTGGAAGAAGAAATCAATGG 61
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 TGGCTTGTTGGAGGTAATAAATGGACCATAAAGCATGGCCTTGGAAGAAGAAATCAATGG 122
Query 62 AGAAAACCGTTGTTGAAAGCAATGGAGAGACTGAGAAGGTTGTGGCTGACAAGATAGAGC 121
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 123 AGAAAACCGTTGTTGAAAGCAAT-----G---GAG-AGGTTGTGGCTGACAAGATAGAGC 173
Query 122 TGGAAAATCGCGTGAAAAGTCTAAATGATAAGCTTACCTCTGTCGAGGCTGAGAGCAATA 181
||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 174 TGGAACATCGCGTGAAAAGTCTAAATGATAAGCTTAACTCTGTGGAGGCTGAGAGCAATA 233
Query 182 AGCATGAGACTGAGGCGCAAGAAGCAATTGTTGGTTGGGAGAAGACAAAAGCTGAAGTAG 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 234 AGCATGAGACTGAGGCGCAAGAAGCAATTGTTGGCTGGGAGAAGACAAAAGCTGAAGTAG 293
Query 242 CATCTCTCAAAAAGAAACTTGATGAAGCTTTGAATGAAAAACACAGGAGTGAGGAAAGGT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CATCTCTCAAAAAGAAACTTGATGAAGCTTTGAATGAAAAACACAGGAGTGAGGAAAGGT 353
Query 302 CGAGTCACACGGATGCTGGTCTAAAAGAATGTATGCAACAGCTTCGTTTTGTTCGTGAGG 361
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 354 CGAGTCACACGGATGCTGGTCTAAAAGAATGTGTGCAGCAGCTTCGTTTTGTTCGTGAGG 413
Query 362 AGCAGGAGAGAAGGATGCATGATGCTTTGACAAAAGCATCACAGGAGTACGAACAGCGAT 421
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 AGCAGGAGCGAAGGATGCATGATGCTTTGACAAAAGCATCACAGGAGTACGAACGGCGAT 473
Query 422 TGATTGTTATAAAGACGGAATTGGCAGGTACTAGTAAGAGGCTTGCAGAAGCAGAAGGTG 481
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
Sbjct 474 TGATTGTTATAAAGACGGAATTGGCAGGTAGTGGTAAGAGGCTTGCTGAAGCAGAAGGCG 533
Query 482 AGAACGCTCAACTCTCAATGGCTTTGTTAGCAAAGAACAAAACTGTTGAAGATTTAAACA 541
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGAATGCTCAACTCTCAAAGGCTTTGTTAGCAAAGAACAAAACTGTTGAAGATTTAAACA 593
Query 542 GAGTGAGGGATCGTATCGAGGTTGATTTCAATTCTTTGGTGAGTAGTTTAGAGTCCAAGG 601
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 594 GAGAGAGGGACCGTATAGAGGTTGATTTCAATTCTTTGGTGAGTAGTTTAGAGTCGAAAG 653
Query 602 AGAAAGAAAACGTTTCACTGAGATATGAAGTCCGAGTGCTGGAGAAAGAGCTTGAGCTTC 661
||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct 654 AGAAAGAAAACGTTTCATTGAGATATGAAGTTCGAGTGCTGGAGAAAGAGCTCGAGCTTC 713
Query 662 GGAATGAAGAGAGAGAGTTTAGACGTCGAACCGCTGAAGCATCTCATAAACTGCACTTAG 721
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 714 GGAATGAAGAGAGAGAGTTTAGCCGTCGAACTGCTGAAGCATCGCATAAACTGCACTTAG 773
Query 722 AGAATGTGAAGAAAGTTGCAAAGTTAGAATCAGAGTGTCAAAGGTTACGGGTTCTGGTCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGAATGTGAAGAAAGTTGCAAAGTTAGAATCAGAGTGTCAAAGGTTACGGGTTCTGGTCA 833
Query 782 GGAAACGGTTACCAGGACCCGCTGCTCTGTCTAAAATGAGGAATGAAGTAGAGATGTTGG 841
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 834 GGAAACGGTTACCAGGACCCGCTGCTCTTTCTAAAATGAGCAATGAAGTAGAGATGTTGG 893
Query 842 GAAGAAGAAGGGTCAATGGAAGCCCTAACAGTCCGATGATTGATTCCGAAAAAATCAATA 901
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 894 GAAGGAGAAGGGTCAATGGAAGCCCTCATAGTCCGATGATTGATTCCGAAAAAATCAATA 953
Query 902 ACCTCACTGAGCAATTATGCTTACTGGAAGAAGAGAACAAAACTCTGAGGGAAGCCTTAA 961
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 954 ACCTTACTGAACAATTATGCTTACTGGAAGAAGAGAACAAAACTCTAAGGGAAGCCTTAA 1013
Query 962 ACAAGAAAGTCAGTGAGCTTCAGTTTTCAAGAAATATGTATTCTCGAACAG 1012
||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1014 ACAAGAAAGTCAGTGAGCTTCAGTTCTCGAGAAATATGTATTCTCGAACAG 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134246739468
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5