BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932342

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23440.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   357    3e-98


> AT2G23440.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 
25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9979405-9979819 
FORWARD LENGTH=415
Length=415

 Score =  357 bits (193),  Expect = 3e-98
 Identities = 256/285 (90%), Gaps = 10/285 (4%)
 Strand=Plus/Plus

Query  1    TCGTCTCGGTTTTT-TGA-TCAATGGCGA-GAGTTAATGTTTACCTTTTTGCATTTATCT  57
            |||||||||||||| | | | |||||||| || ||||||||||| |||||||||||||||
Sbjct  58   TCGTCTCGGTTTTTCT-AGT-AATGGCGACGA-TTAATGTTTACGTTTTTGCATTTATCT  114

Query  58   TTCTTTTGACTATTACTATTGGTTCCATTGAAGGCCGAACACTCACCAAGTCCACCGTAA  117
            ||||||||||||||| | ||||||| ||||||||||||| ||||||||| | ||||||||
Sbjct  115  TTCTTTTGACTATTAGTGTTGGTTCAATTGAAGGCCGAAAACTCACCAAATTCACCGTAA  174

Query  118  CGACGTCTGAGGAAATCGGAGCTGATGGCCCTGTGTTG-C-T-GTCACCACCGGCTGAAC  174
            ||||||||||||||||| |||||| |||| |||| ||| | | |||||| ||| |||| |
Sbjct  175  CGACGTCTGAGGAAATCAGAGCTGGTGGCTCTGTATTGTCGTCGTCACCTCCGACTGAGC  234

Query  175  CACTTGAGTCGCCGCCGAGCCACAGGGTTGATACCTTCAGACCCACGGCACCTGGACATA  234
            ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||
Sbjct  235  CACTTGAGTCGCCGCCGAGCCACGGGGTTGATACCTTCAGACCTACGGAACCTGGTCATA  294

Query  235  GCCCCGGTATTGGACATTCCGTACACAATTAACGGAGAGGGAACA  279
            ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  295  GCCCCGGTATTGGACATTCCGTACATAATTAACGGAGAGG-AACA  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13170150238


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5