BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg932342 Length=286 Score E Sequences producing significant alignments: (Bits) Value AT2G23440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 357 3e-98 > AT2G23440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9979405-9979819 FORWARD LENGTH=415 Length=415 Score = 357 bits (193), Expect = 3e-98 Identities = 256/285 (90%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 1 TCGTCTCGGTTTTT-TGA-TCAATGGCGA-GAGTTAATGTTTACCTTTTTGCATTTATCT 57 |||||||||||||| | | | |||||||| || ||||||||||| ||||||||||||||| Sbjct 58 TCGTCTCGGTTTTTCT-AGT-AATGGCGACGA-TTAATGTTTACGTTTTTGCATTTATCT 114 Query 58 TTCTTTTGACTATTACTATTGGTTCCATTGAAGGCCGAACACTCACCAAGTCCACCGTAA 117 ||||||||||||||| | ||||||| ||||||||||||| ||||||||| | |||||||| Sbjct 115 TTCTTTTGACTATTAGTGTTGGTTCAATTGAAGGCCGAAAACTCACCAAATTCACCGTAA 174 Query 118 CGACGTCTGAGGAAATCGGAGCTGATGGCCCTGTGTTG-C-T-GTCACCACCGGCTGAAC 174 ||||||||||||||||| |||||| |||| |||| ||| | | |||||| ||| |||| | Sbjct 175 CGACGTCTGAGGAAATCAGAGCTGGTGGCTCTGTATTGTCGTCGTCACCTCCGACTGAGC 234 Query 175 CACTTGAGTCGCCGCCGAGCCACAGGGTTGATACCTTCAGACCCACGGCACCTGGACATA 234 ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||| Sbjct 235 CACTTGAGTCGCCGCCGAGCCACGGGGTTGATACCTTCAGACCTACGGAACCTGGTCATA 294 Query 235 GCCCCGGTATTGGACATTCCGTACACAATTAACGGAGAGGGAACA 279 ||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 295 GCCCCGGTATTGGACATTCCGTACATAATTAACGGAGAGG-AACA 338 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13170150238 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5