BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932344
Length=2158
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23450.2 | Symbols: | Protein kinase superfamily protein | ... 3014 0.0
AT4G00955.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 544 2e-153
> AT2G23450.2 | Symbols: | Protein kinase superfamily protein
| chr2:9988754-9991695 REVERSE LENGTH=2502
Length=2502
Score = 3014 bits (1632), Expect = 0.0
Identities = 1995/2169 (92%), Gaps = 29/2169 (1%)
Strand=Plus/Plus
Query 8 AGGTAGGTGATGAATATTGAGATCGA----T--TTTCAATCAACGTTCAACGAAGATGGT 61
||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 191 AGGAAGGTGATGAATGTTGAGATCGATTTTTGATTTCAATCAACGTTCAACGAAGATGGT 250
Query 62 GATGATTTCTCATAACTTGAATTTGATTTTGGTGATCGTATTCGTAATCGGAGGATCTGT 121
||||||||||||||| ||| ||||||||||||| || || |||||||||||||||||
Sbjct 251 GATGATTTCTCATAAGTTGGATTTGATTTTGGTTTTCATAATCGTAATCGGAGGATCT-A 309
Query 122 TTCTTTC-TC-CG---CGGCTAATTTCACTGAACCTTGTAACGGAAGATGCGGTGGATTG 176
|| || | | | | ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 310 TT-TTCCGACGAGTTTCTGCTAATTTCACCGTACCTTGTAACGGAAGATGCGGTGGATTG 368
Query 177 ACTCTGCCTTATCCTTTCGGATTTTCAAACGGTTG-TCGGATCCAATTCGATTGCTCTGC 235
|||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||
Sbjct 369 ACTCTGCCTTATCCTTTCGGGTTTTCAAACGGTTGTTC-GATCCGATTCGATTGCTCTGC 427
Query 236 GGTGGAGAAACCGATGATCGGAGACTTTTCCGTCCAAAACGTGACGGAAGACGGTATATT 295
|| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 428 GGCGGAGAAACCGATGATCGGAGACTTTTCCGTTCAAAACGTGACGGAAAACAGTATATT 487
Query 296 TGTCGGTCTCCCTCACAATTGCACTCGGAAGATTGAAGATATGAGA-CCGCTATTCGGCG 354
|||||||||| |||||||||| |||||||||||||||||||||| | ||||| |||||||
Sbjct 488 TGTCGGTCTCTCTCACAATTGTACTCGGAAGATTGAAGATATGA-ATCCGCTTTTCGGCG 546
Query 355 AGCATTTCGCACCGACGTCGGAGAATAGTTTCCTAATGGAGGATTGTGTGAATACAACTG 414
|| |||||||||| ||||||||||| |||||| | |||||| ||||| ||| || |
Sbjct 547 AGAATTTCGCACCAACGTCGGAGAACAGTTTCTTGATGGAGAATTGTAACCGTACCACCG 606
Query 415 ATGGTTGCTCGATCAATCAGAAG-TTCTTGGAGAATGTGCTGAATCTGGAAAGTTGCGAT 473
|||||||||| ||||| |||||| ||| |||||||||||||||| || ||||||| |||
Sbjct 607 ATGGTTGCTCTATCAAGCAGAAGTTTC-TGGAGAATGTGCTGAAACTCAAAAGTTGTGAT 665
Query 474 TCGAAGGGAAACATTAGTTGTTTTTCCTTGGATACTAATTCAAGTTCGAAAAATTCAGCC 533
| | |||||||| ||||||||||| || |||| |||||| |||||||| || |||||
Sbjct 666 GCTACTGGAAACATAAGTTGTTTTTCTTTAGATAGTAATTCGAGTTCGAAGAACTCAGCT 725
Query 534 AAGTTTTTCAGTATGAAGGA-ATTGAGGAACAGCTCGTGTAGTTTGTTGTTTTCTTCGAT 592
||||||||||||||||| || ||| |||||||||||||||||||||||||| || |||||
Sbjct 726 AAGTTTTTCAGTATGAA-GACATTAAGGAACAGCTCGTGTAGTTTGTTGTTCTCGTCGAT 784
Query 593 AGCTTTTGAGTCTGGAGGTCTGAATGCGGGTATAGCGCTAGAGTTTGAGCGAGTTAGGTT 652
|||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 785 AGCTTTCGAGTCTGTAGGTGTGAATGCGGGTATAGCGTTAGAGTTTGAGCGAGTTCGGTT 844
Query 653 AGGTTGGTGG-TTAAAAGGAAGTTGCAAAAACAGTCCTTGCGCGGCTAACACCAATTGTA 711
|||||||||| || || ||| ||||| | | | | ||||||||||||||||| ||||||
Sbjct 845 AGGTTGGTGGCTT-AAGGGAGGTTGCGAGAGCGGAACTTGCGCGGCTAACACCGATTGTA 903
Query 712 CAGACGTTGATACTCCTCATGGATATGCGGGATACCGGTGCTCATGTCTTGAGGGTTACC 771
|||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| ||
Sbjct 904 CAGACGTTGAAACTCCTCATGGATATGCAGGACACCGGTGCTCATGTCTTGACGGTTTCC 963
Query 772 ATGGAGACGGATTCATCAAGGCGTGCCAGAGAGCCCTACCGGACTGCCGTGGTTCCAAGC 831
| || ||||||| || ||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 964 ACGGTGACGGATACACCAACCCTTGCCAGAGAGCACTACCGGAGTGCCGTGGTTCCAAGC 1023
Query 832 TCGTCTGGCGACATTGTAGATCTAATCTTATTACTATTGTAGGAGGAACTGTTGGTGGAG 891
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TCGTCTGGAGACATTGTAGATCTAATCTTATTACTATTGTAGGAGGAACTGTTGGTGGAG 1083
Query 892 CGTTTTTGCTAGCTGGCTTGGCTCTTTTGTTCTTTTGTAAGCGGAGACGGTCTACTCCTT 951
||||||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1084 CGTTTTTACTAGCTGCCTTGGCTTTTTTCTTCTTTTGTAAGCGGAGACGGTCTACTCCTT 1143
Query 952 TGAGAAGCCATTTAAGCGCAAAGCGGCTTTTGTCTGAAGCTGCAGGAAACTCAAGTGTCG 1011
||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1144 TGAGAAGTCATTTAAGCGCAAAGCGTCTTTTGTCTGAAGCTGCAGGGAACTCGAGTGTCG 1203
Query 1012 CCTTTTTCCCTTACAAGGAAATCGAGAAAGCGACAGATGGTTTCTCTGAAAAGCAGCAGC 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1204 CCTTTTTCCCTTACAAGGAAATCGAGAAAGCGACAGATGGTTTCTCTGAAAAGCAGAAGT 1263
Query 1072 TAGGAGTAGGTGCATACGGTACGGTCTATAGAGGAAAGCTCCAAAATGATGAATGGGTTG 1131
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TAGGAATAGGTGCATATGGTACGGTCTATAGAGGAAAGCTCCAAAATGATGAATGGGTTG 1323
Query 1132 CTATCAAAAGACTCAGGCACAGAGATTCAGAAAGTCTTGACCAAGTCATGAATGAGATCA 1191
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTATCAAAAGACTTAGACATAGAGATTCAGAAAGTCTTGACCAAGTCATGAATGAGATCA 1383
Query 1192 AGCTTCTTTCCTCTGTAAGTCACCCAAATCTTGTTCGTCTCTTAGGATGCTGTATAGAAC 1251
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 1384 AGCTTCTTTCCTCTGTGAGTCACCCGAATCTTGTCCGTCTCTTAGGATGTTGTATAGAAC 1443
Query 1252 AAGGCGATCCAGTTCTCGTTTATGAGTACATGCCGAATGGAACTCTATCAGAACATCTAC 1311
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1444 AAGGCGATCCAGTTCTCGTTTATGAGTACATGCCGAATGGAACTCTATCTGAACATCTAC 1503
Query 1312 AGAGAGATAGAGGGAGTGGTCTTCCATGGACCTTACGCCTCACTGTTGCCACTCAAACTG 1371
| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
Sbjct 1504 AAAGAGATAGAGGGAGTGGTCTTCCATGGACCTTGCGTCTCACTGTTGCTACTCAAACAG 1563
Query 1372 CTAAAGCAATCGCGTATCTCCACTCTGCAATGAACCCACCGATCTATCACCGTGACATCA 1431
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1564 CTAAAGCAATCGCGTATCTCCACTCTTCAATGAACCCACCGATCTATCACCGTGACATCA 1623
Query 1432 AATCTACCAATATCCTTCTTGATTATGATTTCAACTCCAAAGTTGCGGATTTCGGACTCT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 AATCTACCAATATCCTTCTTGATTATGATTTCAACTCCAAAGTTGCGGATTTCGGACTCT 1683
Query 1492 CTAGACTGGGAATGACGGAATCTTCTCACATATCAACGGCTCCTCAAGGGACTCCTGGTT 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 CTAGACTGGGAATGACGGAATCTTCTCACATATCAACGGCTCCTCAAGGGACTCCTGGTT 1743
Query 1552 ATCTTGACCCGCAGTACCATCAATGCTTCCATCTTTCTGATAAAAGCGACGTCTACAG-T 1610
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 1744 ATCTTGACCCGCAGTACCATCAATGCTTTCATCTCTCTGATAAGAGCGACGTCTACAGCT 1803
Query 1611 TTCGGAGTCGTCCTTGCCGAGATTATAACAGGATTGAAAGTCGTTGATTTCACCCGCCCA 1670
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1804 TT-GGAGTCGTCCTTGCCGAGATTATAACGGGATTGAAAGTCGTTGATTTCACACGTCCA 1862
Query 1671 CATACCGAAATCAACCTAGCAGCTCTTGCTGTTGACAAAATCGGGTCAGGTTGTATCGAT 1730
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1863 CATACCGAAATCAACCTAGCGGCTCTTGCTGTTGACAAAATCGGGTCAGGTTGTATCGAT 1922
Query 1731 GAGATTATAGACCCGATTCTTGACCTGGATCTCGACGCATGGACACTCTCATCAATACAC 1790
||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1923 GAGATAATAGACCCGATTCTTGACTTGGATCTCGACGCATGGACTCTCTCATCCATACAC 1982
Query 1791 ACAGTGGCTGAGCTCGCATTTCGATGCTTAGCCTTCCACAGCGACATGAGACCGACAATG 1850
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1983 ACGGTGGCTGAGCTTGCATTTCGATGCTTAGCCTTCCACAGTGACATGAGACCGACAATG 2042
Query 1851 ACTGAAGTAGCAGACGAGCTCGAACAGATACGACTCAACGGTTGGATTCCAAACATGAGC 1910
|| |||||||| |||||||| ||||||||| |||||| ||||||||||||| |||||||
Sbjct 2043 ACCGAAGTAGCGGACGAGCTTGAACAGATAAGACTCAGTGGTTGGATTCCAAGCATGAGC 2102
Query 1911 TTGGATTCACCAGCCGGTTCTCTCCGGTCATCTGATCGAGGAAGCGAAAGATCAGTTAAA 1970
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2103 TTGGATTCACCAGCCGGTTCTCTCCGTTCATCTGATCGAGGAAGCGAAAGATCAGTTAAA 2162
Query 1971 CAATCATCAACAGGAAGCAGAAGAGTCGTTATCCCTCAGAAACAAC-TGGATAACCTCGC 2029
|||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 2163 CAATCATCAATAGGAAGCAGAAGAGTCGTTATCCCTCAGAAACAACCTG-ATTGCCTCGC 2221
Query 2030 TTCCGTTGAAGAGATTAGCGATAGCTCACCCATCTCAGTTCAAGATCCTTGGTTAAGTGC 2089
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 ATCCGTCGAAGAGATTAGCGATAGCTCACCCATCTCAGTTCAAGATCCTTGGTTAAGTGC 2281
Query 2090 ACAGAGCTCACCTTCTACAAATACATTGCTCGGTAACATTCCAAGGTGATAATGA-GATC 2148
||| |||||||| |||||||||||||||||||||||||||||||| ||||| | | ||||
Sbjct 2282 ACAAAGCTCACCGTCTACAAATACATTGCTCGGTAACATTCCAAGATGATAGT-ATGATC 2340
Query 2149 TCAAGACAC 2157
|||| ||||
Sbjct 2341 TCAAAACAC 2349
> AT4G00955.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like
(InterPro:IPR006210); BEST Arabidopsis thaliana protein
match is: Protein kinase superfamily protein (TAIR:AT2G23450.1);
Has 94 Blast hits to 88 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 84;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:412118-413327
FORWARD LENGTH=1210
Length=1210
Score = 544 bits (294), Expect = 2e-153
Identities = 654/819 (80%), Gaps = 60/819 (7%)
Strand=Plus/Plus
Query 1 TGTTTTCAGGTAGGTGATGAATATTGAGATCGATTTTCAATCAACGTTCAACGAAGATGG 60
||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 47 TGTTTACAGGAAGGTGATGAATGTTGAGATCGA--TTCAATCAACGTTCAACGAAGATGG 104
Query 61 TGATGATTTCTCATAACTTGAATTTGATTTTGGTGATCGTATTCGTAATCGGAGGATCTG 120
||||||||||| |||| || |||||| ||| ||||| || || | ||||||||||||
Sbjct 105 TGATGATTTCTTATAAGTTAAATTTG-GTTT--TGATCATAATCTTGATCGGAGGATCTT 161
Query 121 TT-------T-C-----T-TTCT-CCGCGGCTAATTTCACTGAACCTTGTAACGGAAGAT 165
|| | | | |||| ||||||||||||| || ||| |||||||||||| ||
Sbjct 162 TTAACGACCTACGAGTTTCTTCTGCCGCGGCTAATTTGACCGAAACTTGTAACGGAATAT 221
Query 166 GCGGTGGATTGACTCTGCCTTAT-CCTTTCGGATTTTCAAACGGTTGTCGGATCCAATTC 224
| ||||||||||||||| ||||| ||||| || ||||| ||||||| ||||||||||
Sbjct 222 GTGGTGGATTGACTCTGTCTTATCCCTTT-GGGTTTTCTCTTGGTTGTCCGATCCAATTC 280
Query 225 GATTGCTCTGC-G-GTGGAGAA--ACCGATGATCGGAGACTTTTCCGTCCAAAACGTGAC 280
|||||||||| | | || || ||| ||||||||| ||| ||||||||||||||||
Sbjct 281 AATTGCTCTGCTGCG-GGCCAAGGGGCGAAGATCGGAGAGTTTCCCGTCCAAAACGTGAC 339
Query 281 GGAAGACGGTATATTTGTC-G-GTCTCCCTCACAATTGCACTCGGAAGATTGAAGATATG 338
|||| || ||||||| ||| | || ||| | |||||| ||||||||||||||||| |||
Sbjct 340 GGAAAACAGTATATTGGTCGGCGT-TCCAAC-CAATTGTACTCGGAAGATTGAAGACATG 397
Query 339 AGACCGCTATTCGGCGAGCATTTCGCACCGA-CGTCGGAGAATAGTTTCCTAATGGAGGA 397
| ||||| |||||| |||| ||| |||| | |||||||||| |||||| |||||||| |
Sbjct 398 ACTCCGCTTTTCGGCAAGCAGTTCACACC-ATCGTCGGAGAACAGTTTCTTAATGGAGAA 456
Query 398 TTGTGTGAATACAACTGATGGTTGCTCGATCAATCAGAAG-TT-CTTGGAGAATGTGCTG 455
|||||||||| |||| |||| ||||| || || || ||| || ||| || || |
Sbjct 457 TTGTGTGAATCCAACCAATGGCTGCTCCATAAACCA-AAGATTCCTT-GATAA---AC-- 509
Query 456 AATCTGGAAAGTTGCGATTCGAAGGGAAACATTAGTTGTTTTTCCTTGGATACTA-ATTC 514
| ||| ||||||| || || | |||||| || || || |||||| | | | | || |
Sbjct 510 -AGCTGAAAAGTTGTGAATCCACGGGAAATATAAGCTG-TTTTCC---G-T-C-AGATAC 561
Query 515 AAGTTCGAAAAA-TTCAGCCAAGTTTTTCAGTATGAAGGAATTGAGGAACAGCTCGTGTA 573
||||| ||||| ||||| || ||| |||||||||||||||||| ||| ||||||||
Sbjct 562 GAGTTC-AAAAAGTTCAG--AA-TTTCTCAGTATGAAGGAATTGACGAATAGCTCGTGCC 617
Query 574 GTTTGTTGTTTTCTTCGATAGCTTTTGAGTCTGGAGGTCTGAATGCGGGTATAGCGCTAG 633
||||||||| | ||||||||| | ||||||| |||| |||||| ||| |||||| |||
Sbjct 618 GTTTGTTGTACACGTCGATAGCTCTCGAGTCTGTAGGTGTGAATGTGGGGATAGCGGTAG 677
Query 634 AGTTTGAGCGAGTTAGGTTAGGTTGGTGGTTAAAAGGAAGTTGCAAAAACAGTCCTTGCG 693
||||||| |||||| |||||||||||||| ||| ||| ||||| ||||| | ||||||
Sbjct 678 AGTTTGAACGAGTTCGGTTAGGTTGGTGGCTAATGGGAGGTTGCGAAAACGGAACTTGCG 737
Query 694 CGGCT-AACACCAATTGTACAGACGTTGATACTCCTC-ATGGATATGCGGGATACCGGTG 751
| | ||| | ||||||||||| ||| | ||||| | |||||||||| ||| |||||||
Sbjct 738 TAG-TAAACGCAAATTGTACAGATGTTTACACTCC-CGATGGATATGCAGGACACCGGTG 795
Query 752 CTCATGTCTTGAGGGTTACCATGGAGACGGATTCATCAA 790
||||||||||||||||||||| |||||||||| ||||||
Sbjct 796 CTCATGTCTTGAGGGTTACCACGGAGACGGATACATCAA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107027561940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5