BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932364
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23660.1 | Symbols: LBD10 | LOB domain-containing protein 10... 1469 0.0
> AT2G23660.1 | Symbols: LBD10 | LOB domain-containing protein
10 | chr2:10060242-10061822 REVERSE LENGTH=1097
Length=1097
Score = 1469 bits (795), Expect = 0.0
Identities = 890/937 (95%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTCAACGCCTTGTGCAGCATGCAAGCTCTTGAGGCGTAAATGCACTCAAGAATGT 80
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 162 ATGGCTTCAACACCTTGTGCAGCATGTAAGCTCTTGAGGCGTAAATGCACTCAAGAATGT 221
Query 81 GTGTTTGCGCCGTATTTTCCACCAACTAATCCTCAAAAGTTTATCTTTGTTCACCGAGTC 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GTGTTTGCGCCGTATTTTCCACCAACTAATCCTCAAAAGTTTATCTTTGTTCACCGAGTT 281
Query 141 TTTGGAGCAAGCAATGTAACCAAGATCCTTAACGATCTCCCACCTGATCAACGCGAAGAC 200
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 282 TTTGGAGCAAGCAATGTAACCAAGATCCTCAACGATCTTCCACCTGATCAACGCGAAGAC 341
Query 201 ACTGTTAATTCCCTCTTTTATGAAGCCGAAGCGCGTATCCGTGACCCAATCTATGGATGT 260
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 342 ACTGTTAATTCCCTCTTTTATGAAGCGGAAGCGCGTATCCGTGACCCAATCTATGGATGT 401
Query 261 GTTGGTCTCATCTCTTTTTTACAACAATACCTCAAGAAAATCCAACAAGATCTTGTCACT 320
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 402 GTTGGTCTCATTTCTTTTTTACAACAATACCTCAAGAAAATTCAACAAGATCTTCTCACT 461
Query 321 GCTAAAGAAGAGCTCGCCGGTTACATGGGACCTGATGCTGTGATTCCGCCGCCTTATCTT 380
|||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 462 GCTAAAGAAGAGCTTGTTGGTTACTTGGGACCCGATGCTGTGATTCCGCCGCCTTATCTT 521
Query 381 CCTGCTCTTGGTAACAATCCTCCACCAAATTTCATGATGTCTATGGAAGGAATGCCACCT 440
||| || | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 522 CCTCCTATAGGTAACAATCCTCCTCCCAATTTCATGATGTCTATGGAAGGAATGCCACCA 581
Query 441 GGAGTGATCCCTCAAGGAGAACCGTTGATGATACGTGAACCAAACTTGTCTCAGCAACAT 500
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 582 GGAGTGATCCCTCAAGGAGAACCTTTGATGATACGCGAACCAAACATGTCTCAGCAACAT 641
Query 501 CATCAACATCAACCGCAAGACGAGCAGTTGCAATTCATAGCTTCTGATGCACAGAGAATG 560
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 642 CATCATCAACAACCGCAAGATGAGCAGTTGCAATTCATAGCTTCTGATGCACAGAGAATG 701
Query 561 GCTGCAATGATGTTGGATAGAGGAGATCAACAAGGGATGTTCAATGGTTACGGAATAGAC 620
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GCTGCAATGATGTTGGAGAGAGGAGATCAACAAGGGATGTTCAATGGTTACGGAATAGAC 761
Query 621 AACAATGGTTCGGTTACAGCCACGGGTTTCAACCAAATGGATGTGAATGATCATGGCGCT 680
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 762 AACAATGGTTCGGTTACAGCCACGGGTTTTAACCAAATGGATGTGAATGATCAAGGTGCT 821
Query 681 AGTGGGTGGTTGTCTGGACCATCTCTTGCTTTAGGAAGCTTTGGTGATGCTTTTCAAATG 740
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 822 GGTGGTTCGTTGTCTGGACCATCTCTTGCTTTAGGAAGCTTTGGTGATGCTTATCAGATG 881
Query 741 GGTCAAGAGACAGAACATGGTCATATCAACCATGATCAGCTTCAGACACAGCTTATGCTT 800
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GGTCAAGAGACAGAGCATGGTCATATCAACCATGATCAGCTTCAGACACAGCTTATGCTT 941
Query 801 CAGCCTCCACTACAAGAAGGTCAAGAGCAAACAGAGGAAGGACAGTTTCT-GATGCAACC 859
||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 942 CAGCCTCCATTACAAGAAGGTCAAGAACAAACAGAGGAAGGACAGTT-CTTGATGCAACC 1000
Query 860 AATGGGACAAGAGAATCTCCATGAAGAAGAGGAAGAGGAAGAGCTTGAGCCACCGATTAA 919
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 1001 AATGGGACAAGAGAATCTTCATGACGAAGAGGAGGAGGAAGAGCTTGAGCCACCGGTTAA 1060
Query 920 ATGGAGGAAGTCTGAGAGCAAGGAAGCTAGTTATTAA 956
|||||||| |||||||| |||||||||||||| ||||
Sbjct 1061 ATGGAGGATGTCTGAGAACAAGGAAGCTAGTTTTTAA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5